Browse Element(s) Details


Os.15456.1.S1_at

Description gb:AK121182.1
DB_XREF= gi:37990805
TID=Os.15456.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084H11, full insert sequence.
FL= gb:AK121182.1 gb:AK058448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3609011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36070OsAffx.15770.1.S1_at11/116+21088971..21090313expressed protein
LOC_Os06g36080OsAffx.27959.1.S1_x_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080Os.19335.1.S1_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080OsAffx.27303.1.S1_at1/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36090Os.15456.1.S1_at11/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36090Os.15456.2.S1_x_at4/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36099NANA6+21128367..21128976NA
LOC_Os06g36110OsAffx.20733.1.A1_x_at1/116+21136513..21141892retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36120NANA6+21142754..21143752retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36130NANA6+21144090..21145268retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15456.1.S1_at--189--8291Chr06:21112890..21112914 (25 bp)
GGCGTTCTATTCCTTGTTCAACCTA
LOC_Os06g36090
Os.15456.1.S1_at--1062--6751Chr06:21112875..21112899 (25 bp)
GTTCAACCTATTCTCAGGATTCTTC
LOC_Os06g36090
Os.15456.1.S1_at--95--1011Chr06:21112863..21112884 (22 bp)
AGGATTCTTCATTCCGAGACCAAGG
LOC_Os06g36090
Os.15456.1.S1_at--946--2971Chr06:21112740..21112764 (25 bp)
AATGGTGGATCTGGTACTACTGGCT
LOC_Os06g36090
Os.15456.1.S1_at--434--1951Chr06:21112722..21112746 (25 bp)
ACTGGCTTTGCCCATTGGCATGGAC
LOC_Os06g36090
Os.15456.1.S1_at--311--6931Chr06:21112694..21112718 (25 bp)
GTATGGGCTCATAGTGACACAGTAT
LOC_Os06g36090
Os.15456.1.S1_at--632--1431Chr06:21112661..21112685 (25 bp)
AGAACAAATCATCTCAGTCCCTGGC
LOC_Os06g36090
Os.15456.1.S1_at--659--8451Chr06:21112640..21112664 (25 bp)
TGGCCAATCCAACCAGACAATCAGC
LOC_Os06g36090
Os.15456.1.S1_at--244--5611Chr06:21112625..21112649 (25 bp)
GACAATCAGCTACTATGTTACTCAT
LOC_Os06g36090
Os.15456.1.S1_at--152--3131Chr06:21112581..21112605 (25 bp)
AATTTATGCCAGTTGTTGCGCCGGT
LOC_Os06g36090
Os.15456.1.S1_at--1101--4131Chr06:21112544..21112568 (25 bp)
CGCTGTGTTTTTCGCGTTCATGTAT
LOC_Os06g36090
Target Sequence 
GGCGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAAGGATTCCCAAATGGTGGATCTGGTACT
ACTGGCTTTGCCCATTGGCATGGACAGTGTATGGGCTCATAGTGACACAGTATGGAGACCTAGAACAAATCATCTCAGTC
CCTGGCCAATCCAACCAGACAATCAGCTACTATGTTACTCATCATTTTGGATATCACAGGAAATTTATGCCAGTTGTTGC
GCCGGTGCTCGTGCTCTTCGCTGTGTTTTTCGCGTTCATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis