Browse Element(s) Details


Os.15474.1.S1_x_at

Description gb:AK065221.1
DB_XREF= gi:32975239
TID=Os.15474.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G18, full insert sequence.
FL= gb:AK065221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3111011/11CRS2-associated factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31070OsAffx.16343.1.S1_at1/111+17314501..17315839retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31080NANA1+17316231..17318848retrotransposon protein, putative, unclassified
LOC_Os01g31090NANA1+17325659..17326471hypothetical protein
LOC_Os01g31100OsAffx.23458.2.S1_at11/111+17332350..17333120hypothetical protein
LOC_Os01g31110Os.15474.1.S1_x_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.43143.1.S1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110Os.48257.1.A1_at11/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31110OsAffx.31445.1.S1_x_at2/111+17339517..17343168CRS2-associated factor 1, putative, expressed
LOC_Os01g31120NANA1+17347843..17350482hypothetical protein
LOC_Os01g31124NANA1+17351577..17352478hypothetical protein
LOC_Os01g31130OsAffx.7695.1.S1_at2/111+17353329..17356260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31140OsAffx.23459.1.S1_at11/111+17360574..17360882hypothetical protein
LOC_Os01g31140OsAffx.23459.1.S1_x_at11/111+17360574..17360882hypothetical protein
LOC_Os01g31150OsAffx.31869.1.S1_at2/111+17362682..17364082retrotransposon protein, putative, unclassified
LOC_Os01g31150OsAffx.31869.5.S1_x_at1/111+17362682..17364082retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.1198.1.S1_at11/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.38751.1.A1_at2/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.28492.1.S1_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.49802.1.S2_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.30280.1.S1_x_at1/111+17364579..17369123retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15474.1.S1_x_at--100--2511Chr01:17342489..17342513 (25 bp)
AACTTGTCTAATGGGCAGCAGTGAT
LOC_Os01g31110
Os.15474.1.S1_x_at--714--1931Chr01:17342560..17342584 (25 bp)
ACGGCAGCGATGGTGTTAACAGTGA
LOC_Os01g31110
Os.15474.1.S1_x_at--1014--9811Chr01:17342576..17342600 (25 bp)
TAACAGTGATTCCATAGTCCCTTCC
LOC_Os01g31110
Os.15474.1.S1_x_at--829--10451Chr01:17342616..17342640 (25 bp)
TTACTCCTTTTCAAACAAGCCATTG
LOC_Os01g31110
Os.15474.1.S1_x_at--616--2131Chr01:17342641..17342665 (25 bp)
ACAGTGGCATGGCACTCGTGCTGAA
LOC_Os01g31110
Os.15474.1.S1_x_at--1008--1871Chr01:17342732..17342756 (25 bp)
ACGATACCTGGTACTCCGGCATACA
LOC_Os01g31110
Os.15474.1.S1_x_at--1132--931Chr01:17342760..17342784 (25 bp)
AGGAAGTCCCATGGTACCCAGAAGA
LOC_Os01g31110
Os.15474.1.S1_x_at--988--9951Chr01:17342774..17342798 (25 bp)
TACCCAGAAGACTGAGCCAGCCAAG
LOC_Os01g31110
Os.15474.1.S1_x_at--17--6271Chr01:17342919..17342943 (25 bp)
GATGTTGTTCCACAGGGTACCTTAA
LOC_Os01g31110
Os.15474.1.S1_x_at--1072--6311Chr01:17342949..17342973 (25 bp)
GATGAACTTGCTAAATTACTGGCTT
LOC_Os01g31110
Os.15474.1.S1_x_at--39--7751Chr01:17343002..17343026 (25 bp)
GGTGTGTTGCGTTATCAACCTTGAA
LOC_Os01g31110
Target Sequence 
AACTTGTCTAATGGGCAGCAGTGATGAGATTCATGAATTGGAAACTATGAGGAGAAACTGCAAACATTTAAACGGCAGCG
ATGGTGTTAACAGTGATTCCATAGTCCCTTCCTACATGGAAGGAATTTTACTCCTTTTCAAACAAGCCATTGACAGTGGC
ATGGCACTCGTGCTGAATGAAAATGAGTTTGCTGATGCCAATTATGTNTNNNAAAAGTCTGNTTGCTTTTACANAAGNAC
GGCTCCACGATACCTGGTACTCCGGCATACACCANAGGAAGTCCCATGGTACCCAGAAGACTGAGCCAGCCAAGAATGTA
AGGATAAATAAGCATCTTGAAGAACATAAAGTATCTGATCATGTCAAAAAGAAAGAAATTGTCATGGGAGGATCAAGAAT
GCAGAGAAATGATCANGCACGAGAATTTCTATCAGATGTTGTTCCACAGGGTACCTTAAGAGTAGATGAACTTGCTAAAT
TACTGGCTTAAAGGTGATCGNTCCTTTATTAACNGAAGGTGTGTTGCGTTATCAACCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15474.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis