Browse Element(s) Details


Os.15476.3.S1_x_at

Description gb:NM_193379.1
DB_XREF= gi:34913841
GEN=B1156H12.3
TID=Os.15476.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1156H12.3 (B1156H12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1156H12.3 (B1156H12.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g368409/11MORC family CW-type zinc finger 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36790Os.24917.1.S1_at11/111+20791475..20796096Protein kinase domain containing protein, expressed
LOC_Os01g36800Os.19099.1.S1_x_at2/111+20799656..20801712retrotransposon, putative, centromere-specific
LOC_Os01g36810OsAffx.23532.1.S1_at11/111+20804828..20805472hypothetical protein
LOC_Os01g36820Os.22857.1.A1_at9/111+20806847..20809629expressed protein
LOC_Os01g36820Os.8753.4.S1_x_at2/111+20806847..20809629expressed protein
LOC_Os01g36830OsAffx.23533.1.S1_x_at11/111+20813209..20815482Polygalacturonase family protein, expressed
LOC_Os01g36840Os.15476.1.S1_s_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.52174.1.S1_at11/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_x_at10/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.3.S1_x_at9/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36840Os.15476.2.S1_at8/111+20816003..20824598MORC family CW-type zinc finger 3, putative, expressed
LOC_Os01g36850Os.31233.1.S1_at10/111+20845528..20848349transposon protein, putative, Pong sub-class, expressed
LOC_Os01g36860Os.11734.1.S1_a_at11/111+20849294..20855064RNA helicase DB10, putative, expressed
LOC_Os01g36860Os.11734.3.S1_x_at5/111+20849294..20855064RNA helicase DB10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15476.3.S1_x_at--826--7591Chr01:20821513..20821536 (24 bp)
GGGCATTCTGGAGGCAAACTTCATC
LOC_Os01g36840
Os.15476.3.S1_x_at--36--10131NONE
TATGAATACTGGGACCTGCATTGCC
NONE
Os.15476.3.S1_x_at--1106--9791Chr01:20820124..20820148 (25 bp)
TAAATCTTCCCGTGCACTTAATCGT
LOC_Os01g36840
Os.15476.3.S1_x_at--777--9631Chr01:20820094..20820118 (25 bp)
TCAGATGAATGCTGGCAGTTCCCCG
LOC_Os01g36840
Os.15476.3.S1_x_at--774--3151Chr01:20820067..20820091 (25 bp)
AATTGTTCCACGTCAGCTATTGGCT
LOC_Os01g36840
Os.15476.3.S1_x_at--202--4871Chr01:20820052..20820076 (25 bp)
GCTATTGGCTGCTGATATTCCGACA
LOC_Os01g36840
Os.15476.3.S1_x_at--824--8831Chr01:20820040..20820064 (25 bp)
TGATATTCCGACAAGCAGCTGTGCT
LOC_Os01g36840
Os.15476.3.S1_x_at--490--4731Chr01:20820023..20820047 (25 bp)
GCTGTGCTGTCCCTACATTTATGGC
LOC_Os01g36840
Os.15476.3.S1_x_at--424--171Chr01:20820007..20820031 (25 bp)
ATTTATGGCCCCTGCATTAAGGCAA
LOC_Os01g36840
Os.15476.3.S1_x_at--919--3111Chr01:20819859..20819883 (25 bp)
AATATTGATGCCCTTGGATCCAAGA
LOC_Os01g36840
Os.15476.3.S1_x_at--576--831NONE
ATGGATCTCACTTGGACGTTTCTCA
NONE
Target Sequence 
GGGCATTCTGGAGGCAAACTTCATCAAACCTACCCATGACAAGCAAGATTTTGAAAAGTCGGTCCTTTATCAAAGGCTGG
AGAGCCGCTTGAAAGAAATGACATATGAATACTGGGACCTGCATTGCCATCGTATTGGTTATGACAACAAAAAATTACCT
AAATCTTCCCGTGCACTTAATCGTGCTAATCAGATGAATGCTGGCAGTTCCCCGCCAATTGTTCCACGTCAGCTATTGGC
TGCTGATATTCCGACAAGCAGCTGTGCTGTCCCTACATTTATGGCCCCTGCATTAAGGCAAAAACAGATGGGATTGAAGA
GAAATATTGATGCCCTTGGATCCAAGACAGACAGTGCTGACCAAGATGGATCTCACTTGGACGTTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15476.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis