Browse Element(s) Details


Os.15565.1.A1_at

Description gb:AK063980.1
DB_XREF= gi:32973998
TID=Os.15565.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D03, full insert sequence.
FL= gb:AK063980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2365011/11Hsc70-interacting protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23610OsAffx.29992.1.S1_at11/119+14024469..14025794hypothetical protein
LOC_Os09g23620Os.3391.1.S1_at11/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23620Os.57514.1.S1_x_at1/119+14028431..14029989typical P-type R2R3 Myb protein, putative, expressed
LOC_Os09g23630NANA9+14038994..14039215hypothetical protein
LOC_Os09g23640NANA9+14045753..14049423ABC-2 type transporter family protein
LOC_Os09g23650Os.15565.1.A1_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23650OsAffx.31610.1.S1_x_at11/119+14049929..14052565Hsc70-interacting protein, putative, expressed
LOC_Os09g23660Os.50959.1.S1_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23660Os.14666.2.S1_x_at11/119+14055109..14059315ZIM motif family protein, expressed
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15565.1.A1_at--588--5131Chr09:14049959..14049983 (25 bp)
GCAAATAACTTCAGCAATCTTATGT
LOC_Os09g23650
Os.15565.1.A1_at--600--2051Chr09:14049952..14049976 (25 bp)
ACTTCAGCAATCTTATGTTGGCCCA
LOC_Os09g23650
Os.15565.1.A1_at--646--3651Chr09:14049951..14049975 (25 bp)
CTTCAGCAATCTTATGTTGGCCCAA
LOC_Os09g23650
Os.15565.1.A1_at--560--10531Chr09:14049950..14049974 (25 bp)
TTCAGCAATCTTATGTTGGCCCAAA
LOC_Os09g23650
Os.15565.1.A1_at--464--9651Chr09:14049949..14049973 (25 bp)
TCAGCAATCTTATGTTGGCCCAAAA
LOC_Os09g23650
Os.15565.1.A1_at--866--3391Chr09:14049948..14049972 (25 bp)
CAGCAATCTTATGTTGGCCCAAAAA
LOC_Os09g23650
Os.15565.1.A1_at--3--1491Chr09:14049947..14049971 (25 bp)
AGCAATCTTATGTTGGCCCAAAAAC
LOC_Os09g23650
Os.15565.1.A1_at--546--5191Chr09:14049946..14049970 (25 bp)
GCAATCTTATGTTGGCCCAAAAACT
LOC_Os09g23650
Os.15565.1.A1_at--140--3171Chr09:14049945..14049969 (25 bp)
CAATCTTATGTTGGCCCAAAAACTA
LOC_Os09g23650
Os.15565.1.A1_at--841--10092Chr09:13697866..13698315 (25 bp)
TATGTTGGCCCAAAAACTAATATTG
NONE
Os.15565.1.A1_at--375--8791Chr09:14049937..14049961 (25 bp)
TGTTGGCCCAAAAACTAATATTGGT
LOC_Os09g23650
Target Sequence 
GCAAATAACTTCAGCAATCTTATGTTGGCCCAAAAACTAATATTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15565.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis