Browse Element(s) Details


Os.15638.1.S1_at

Description gb:AK102003.1
DB_XREF= gi:32987212
TID=Os.15638.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to vesicle transport protein (B1064G04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079N06, full insert sequence.
FL= gb:AK102003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3798010/11Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g379901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g37970OsAffx.2182.1.S1_at11/111+21600076..21600698hypothetical protein
LOC_Os01g37980Os.15638.1.S1_at10/111+21602465..21605661Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein
LOC_Os01g38010NANA1+21620195..21621544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38020Os.47983.1.A1_at1/111+21622623..21623379retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006896biological_processGolgi to vacuole transport
GO:0006944biological_processmembrane fusion
GO:0009630biological_processgravitropism
GO:0046907biological_processintracellular transport
GO:0005770cellular_componentlate endosome
GO:0005802cellular_componentGolgi trans face
GO:0005886cellular_componentplasma membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0000149molecular_functionSNARE binding
GO:0004872molecular_functionreceptor activity
GO:0005483molecular_functionsoluble NSF attachment protein activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15638.1.S1_at--21--7691Chr01:21604304..21604327 (24 bp)
GGGTATCTGCTGATCAAAAGTCAAG
LOC_Os01g37980
Os.15638.1.S1_at--547--10091Chr01:21604367..21604391 (25 bp)
TAGGATCAGAGATAGCCACAGAACT
LOC_Os01g37980
Os.15638.1.S1_at--800--5011Chr01:21604427..21604451 (25 bp)
GCAGGACCTGCATCAACAGCGTGAA
LOC_Os01g37980
Os.15638.1.S1_at--747--4651Chr01:21604445..21604469 (25 bp)
GCGTGAACGTCTAATACATGCTCAT
LOC_Os01g37980
Os.15638.1.S1_at--270--631NONE
ATGCTCATGGCACATTGGATAACGT
NONE
Os.15638.1.S1_at--870--6831Chr01:21605367..21605391 (25 bp)
GTTTCATTATAGCTCTCCTTGTGTT
LOC_Os01g37980
Os.15638.1.S1_at--916--9231Chr01:21605382..21605406 (25 bp)
TCCTTGTGTTGGTGATCCTAGTAAT
LOC_Os01g37980
Os.15638.1.S1_at--526--6373Chr01:21605395..21605419 (25 bp)
GATCCTAGTAATCCTGTATTTCAAG
LOC_Os01g37980
Os.15638.1.S1_at--603--8891Chr01:21605429..21605453 (25 bp)
TGAGGGACTCCTTGACCATCCAAGG
LOC_Os01g37980
Os.15638.1.S1_at--148--2571Chr01:21605461..21605485 (25 bp)
AACTGTGTGCGTTCTTTGCATATTC
LOC_Os01g37980
Os.15638.1.S1_at--782--4951Chr01:21605478..21605502 (25 bp)
GCATATTCGTTTTGTCTTATTTCTT
LOC_Os01g37980
Target Sequence 
GGGTATCTGCTGATCAAAAGTCAAGATTGCTCAGGATAACTGAAAAGCAAAATAAAACAACCGATAGGATCAGAGATAGC
CACAGAACTATGCTGGAGACTGAAGATCTTGGAGTCTCCCTCTTGCAGGACCTGCATCAACAGCGTGAACGTCTAATACA
TGCTCATGGCACATTGGATAACGTGGATGACAACATNCGGGAAGAGTAGAAGGATCANTGGGTGCCANTGGTGAGGAGGA
TGGACAGGAACAAGTGGATCATAGGTTTCATTATAGCTCTCCTTGTGTTGGTGATCCTAGTAATCCTGTATTTCAAGTTT
GTGCACNTGAGGGACTCCTTGACCATCCAAGGACTGATGAACTGTGTGCGTTCTTTGCATATTCGTTTTGTCTTATTTCT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis