Browse Element(s) Details


OsAffx.8974.2.A1_at

Description tigr:9629.m03604
TID=OsAffx.8974.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3800011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g37970OsAffx.2182.1.S1_at11/111+21600076..21600698hypothetical protein
LOC_Os01g37980Os.15638.1.S1_at10/111+21602465..21605661Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein
LOC_Os01g38010NANA1+21620195..21621544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38020Os.47983.1.A1_at1/111+21622623..21623379retrotransposon protein, putative, unclassified
LOC_Os01g38030OsAffx.8972.1.S1_s_at11/111+21633234..21635122hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8974.2.A1_at--299--511Chr01:21613384..21613408 (25 bp)
ATCGTCGCCTGCTGTCGCCGTGCAA
LOC_Os01g38000
OsAffx.8974.2.A1_at--1057--9671Chr01:21613332..21613356 (25 bp)
TCACCGCGCAAGAGATGGAAGCACG
LOC_Os01g38000
OsAffx.8974.2.A1_at--907--8111Chr01:21613293..21613317 (25 bp)
GGACTGCCGGAGACCAGCCATTGAC
LOC_Os01g38000
OsAffx.8974.2.A1_at--1036--8051Chr01:21613285..21613309 (25 bp)
GGAGACCAGCCATTGACTCGCGCTC
LOC_Os01g38000
OsAffx.8974.2.A1_at--785--51Chr01:21613274..21613298 (25 bp)
ATTGACTCGCGCTCGACTGCCGTCG
LOC_Os01g38000
OsAffx.8974.2.A1_at--300--8171Chr01:21613238..21613262 (25 bp)
GGAACAGTCGCCATCACCGGGCTTC
LOC_Os01g38000
OsAffx.8974.2.A1_at--878--351Chr01:21613226..21613250 (25 bp)
ATCACCGGGCTTCTCGACGGAACCG
LOC_Os01g38000
OsAffx.8974.2.A1_at--960--5731Chr01:21613211..21613235 (25 bp)
GACGGAACCGTCACACACACCGGAA
LOC_Os01g38000
OsAffx.8974.2.A1_at--704--4991Chr01:21613140..21613164 (25 bp)
GCATGTCGGAACTGCGCGCCGCACA
LOC_Os01g38000
OsAffx.8974.2.A1_at--781--4451Chr01:21613065..21613089 (25 bp)
GCCTCAACATGACTGTGCTCGGTGA
LOC_Os01g38000
OsAffx.8974.2.A1_at--309--2111Chr01:21613059..21613083 (25 bp)
ACATGACTGTGCTCGGTGAAGGAAT
LOC_Os01g38000
Target Sequence 
ATCGTCGCCTGCTGTCGCCGTGCAAGGGAGGGAAGCACGGCCACCGCTAGCCTCACCGCGCAAGAGATGGAAGCACGGCC
GCCGCCACGCCGGACTGCCGGAGACCAGCCATTGACTCGCGCTCGACTGCCGTCGCCGCGCACGCCGGAACAGTCGCCAT
CACCGGGCTTCTCGACGGAACCGTCACACACACCGGAACCGCCACCATCGCCACGCTTCTCGCCGGAACCGCCGCCGTCG
CCGCGCATGTCGGAACTGCGCGCCGCACATGCTGGAGCCGTCGCCGTCGCCGTGCACGCCGCAACCGTCGCCTGTCGCCG
CCTCAACATGACTGTGCTCGGTGAAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8974.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis