Browse Element(s) Details


OsAffx.8972.1.S1_s_at

Description gb:NM_193516.1
DB_XREF= gi:34914115
GEN=P0496H05.7
TID=OsAffx.8972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0496H05.7 (P0496H05.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3803011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein
LOC_Os01g38010NANA1+21620195..21621544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38020Os.47983.1.A1_at1/111+21622623..21623379retrotransposon protein, putative, unclassified
LOC_Os01g38030OsAffx.8972.1.S1_s_at11/111+21633234..21635122hypothetical protein
LOC_Os01g38040NANA1+21639458..21641589hypothetical protein
LOC_Os01g38049OsAffx.31869.1.S1_at8/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_s_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_x_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.5.S1_x_at2/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.2.S1_at1/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8972.1.S1_s_at--263--7612Chr05:27316031..27316055 (25 bp)
GGGCAAGCGGCTGGACGCCGTGGAG
NONE
OsAffx.8972.1.S1_s_at--748--8331Chr01:21633631..21633655 (25 bp)
GGCTGCACGCACGAGCAGGTTGCCT
LOC_Os01g38030
OsAffx.8972.1.S1_s_at--518--3331Chr01:21633622..21633646 (25 bp)
CACGAGCAGGTTGCCTCGACGAGGA
LOC_Os01g38030
OsAffx.8972.1.S1_s_at--307--1471Chr01:21633556..21633580 (25 bp)
AGAAGGGAGTGACGCCGTGGCGCGC
LOC_Os01g38030
OsAffx.8972.1.S1_s_at--803--1032Chr05:27316173..27316197 (25 bp)
AGGTCGAGCGCTTGGTGCGCCACGC
NONE
OsAffx.8972.1.S1_s_at--536--2632Chr05:27316302..27316326 (25 bp)
AACCTACGCGCGAACCCGGTGAGCT
NONE
OsAffx.8972.1.S1_s_at--438--2612Chr05:27316314..27316338 (25 bp)
AACCCGGTGAGCTACGCCGTCGAGC
NONE
OsAffx.8972.1.S1_s_at--132--4252Chr05:27316330..27316354 (25 bp)
CCGTCGAGCTGGTGAGGGCGCCGAA
NONE
OsAffx.8972.1.S1_s_at--541--4672Chr05:27316378..27316402 (25 bp)
GCGTGGCCAGCTTTCTCATCCCGTA
NONE
OsAffx.8972.1.S1_s_at--191--10551Chr01:21633310..21633334 (25 bp)
TTCTCATCCCGTACCGGTTCGGCGA
LOC_Os01g38030
OsAffx.8972.1.S1_s_at--826--7891Chr01:21633295..21633319 (25 bp)
GGTTCGGCGACGGTCCCGAGCTGCG
LOC_Os01g38030
Target Sequence 
GGGCAAGCGGCTGGACGCCGTGGAGTGGAGCTGGCTGCGGCTGCACGCACGAGCAGGTTGCCTCGACGAGGAGCTCCGCC
GCGAGTCGCTGCCCACGTCGAGGAGCTCATCGGAGAAGGGAGTGACGCCGTGGCGCGCGGTCAGGTCGAGCGCTTGGTGC
GCCACGCCGCCAAGCCGAACCGTCGTCCTCGTCCACGCCGACGCCTTCCCCGTCCCCAGTCGCGCCGCCGTGCCGCCTTT
CCCGTTCCCGGTCACCGTCGCCACCGCCGGCAACCTACGCGCGAACCCGGTGAGCTACGCCGTCGAGCTGGTGAGGGCGC
CGAAGGGCGGCGTCGGTGCCATCCCCGGCGTGGCCAGCTTTCTCATCCCGTACCGGTTCGGCGACGGTCCCGAGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8972.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis