Browse Element(s) Details


Os.6768.1.S1_at

Description gb:CA753460
DB_XREF= gi:25797499
DB_XREF=00220009022.F03_020313223D.scf
CLONE=00220009022.F03_020313223D.scf
TID=Os.6768.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6768 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g379509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37920Os.46040.1.A1_at3/111+21568475..21569735expressed protein
LOC_Os01g37920OsAffx.11368.1.S1_at1/111+21568475..21569735expressed protein
LOC_Os01g37930NANA1+21573756..21577061retrotransposon protein, putative, unclassified
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g37970OsAffx.2182.1.S1_at11/111+21600076..21600698hypothetical protein
LOC_Os01g37980Os.15638.1.S1_at10/111+21602465..21605661Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g37990OsAffx.693.2.S1_at11/111+21609490..21611695hypothetical protein
LOC_Os01g37990Os.15638.1.S1_at1/111+21609490..21611695hypothetical protein
LOC_Os01g38000OsAffx.8974.2.A1_at11/111+21612929..21613468hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6768.1.S1_at--942--4151Chr01:21588720..21588744 (25 bp)
CGCGCCGATCGATCAGGAGTAGCAA
NONE
Os.6768.1.S1_at--185--1191Chr01:21588737..21588761 (25 bp)
AGTAGCAATGGCCAGGTTCTCCGCA
NONE
Os.6768.1.S1_at--470--10671Chr01:21588940..21588964 (25 bp)
TTCCTCTGAATGCTTTTGCTTCAGA
LOC_Os01g37950
Os.6768.1.S1_at--389--9651Chr01:21588960..21588984 (25 bp)
TCAGATCTAGCAGTACAGTGGTCGT
LOC_Os01g37950
Os.6768.1.S1_at--1159--7791Chr01:21588979..21589003 (25 bp)
GGTCGTGCGAGTCTTACTTAGCATT
LOC_Os01g37950
Os.6768.1.S1_at--862--10431Chr01:21589016..21589040 (25 bp)
TTAGTAGCGATGATGACGTGTGCGT
LOC_Os01g37950
Os.6768.1.S1_at--835--3991Chr01:21589038..21589062 (25 bp)
CGTGTGGAGGCATTGTTTTTTGGTT
LOC_Os01g37950
Os.6768.1.S1_at--266--6911Chr01:21589123..21589147 (25 bp)
GTATCTGTTAGACTGTTACTACTAC
LOC_Os01g37950
Os.6768.1.S1_at--331--10851Chr01:21589186..21589210 (25 bp)
TTGGGATCTGTGTATTTACCACTTG
LOC_Os01g37950
Os.6768.1.S1_at--857--10451Chr01:21589201..21589225 (25 bp)
TTACCACTTGAGTACACTGTTCTGA
LOC_Os01g37950
Os.6768.1.S1_at--929--3331Chr01:21589215..21589239 (25 bp)
CACTGTTCTGAGAGATCGTTATTGA
LOC_Os01g37950
Target Sequence 
CGCGCCGATCGATCAGGAGTAGCAATGGCCAGGTTCTCCGCAGCCGCCGTGATCGCCTTCGCCGTGGTGGCCGCGGCCGC
GCTGGCCACCGTGGCGTCCGCCGCCGACGCGCCGGCACCCGCCCCGACCTCCGGCGCGGTGGCGGCCGTCTCGGNCGCCT
CTCTCCGTGTGCTGCGTCGCCGGCCTCCTCCTCGCCTTGCTCCGCCACTGAAGCGTTCTTCNNNTTCCTCTGAATGCTTT
TGCTTCAGATCTAGCAGTACAGTGGTCGTGCGAGTCTTACTTAGCATTTAGTATTAGAGCTTAGTAGCGATGATGACGTG
TGCGTGTGGAGGCATTGTTTTTTGGTTGGATCTATGGGGTTTTACGGGTTGGTTTGGAGTGAGGAGGATTTGAGATGGGG
ATTATTAGTATCTGTTAGACTGTTACTACTACTGGTTTATTTATTTTGGTAGTCTTTTGGTGTGATGGGTTTGGGATCTG
TGTATTTACCACTTGAGTACACTGTTCTGAGAGATCGTTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis