Browse Element(s) Details


OsAffx.11368.1.S1_at

Description tigr:9629.m03596
TID=OsAffx.11368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g379201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37890NANA1+21538313..21544468transposon protein, putative, unclassified
LOC_Os01g37900Os.2987.3.S1_x_at8/111+21546401..21549201transposon protein, putative, unclassified
LOC_Os01g37910Os.4189.1.S1_at11/111+21557240..21561758Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
LOC_Os01g37910Os.47874.1.S1_at1/111+21557240..21561758Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
LOC_Os01g37920Os.46040.1.A1_at3/111+21568475..21569735expressed protein
LOC_Os01g37920OsAffx.11368.1.S1_at1/111+21568475..21569735expressed protein
LOC_Os01g37930NANA1+21573756..21577061retrotransposon protein, putative, unclassified
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11368.1.S1_at--670--2991Chr01:21569946..21569970 (25 bp)
AATGAACACAGATCAAGCACTAGCT
NONE
OsAffx.11368.1.S1_at--483--3711Chr01:21569923..21569947 (25 bp)
CTAGTACTAGTAGCGGCAGATCTGG
NONE
OsAffx.11368.1.S1_at--446--2031Chr01:21569918..21569942 (25 bp)
ACTAGTAGCGGCAGATCTGGAGCAA
NONE
OsAffx.11368.1.S1_at--351--1191Chr01:21569915..21569939 (25 bp)
AGTAGCGGCAGATCTGGAGCAAAAT
NONE
OsAffx.11368.1.S1_at--65--6411Chr01:21569905..21569929 (25 bp)
GATCTGGAGCAAAATGAGACACGAA
NONE
OsAffx.11368.1.S1_at--632--351Chr01:21569857..21569881 (25 bp)
ATAACCAACAAATTTCGCTAGCTAG
NONE
OsAffx.11368.1.S1_at--189--2651Chr01:21569855..21569879 (25 bp)
AACCAACAAATTTCGCTAGCTAGCG
NONE
OsAffx.11368.1.S1_at--415--2471Chr01:21569851..21569875 (25 bp)
AACAAATTTCGCTAGCTAGCGATGG
NONE
OsAffx.11368.1.S1_at--798--2391Chr01:21569789..21569813 (25 bp)
AAAAATAGTAGATCTAGGCGAAGGC
NONE
OsAffx.11368.1.S1_at--1072--731Chr01:21569449..21569473 (25 bp)
ATGTTTTGCTTGTGCTCGTGTGGAG
LOC_Os01g37920
OsAffx.11368.1.S1_at--203--4631NONE
GCGTCGGGTGCGAGGGTGTTCAAAT
NONE
Target Sequence 
AATGAACACAGATCAAGCACTAGCTAGTACTAGTAGCGGCAGATCTGGAGCAAAATGAGACACGAATAATAATAATAATA
ATAATAATAATAACCAACAAATTTCGCTAGCTAGCGATGGCAGTAATAATAACAATAATAATAATGGTGATAAATAGAAA
AATAGTAGATCTAGGCGAAGGCGGCACTAGCCGGATCTCCCATCGACGGAGAGACGGGACGGGGCTCAGTGGCGGATGGC
GGCGAAGAGGAAGGCGGCGGCGGAGGCGACGAGCGCCGCGGCGAGGGGCGTCGCGGCCGCGCCGGCGGCGGAGGTGGGGC
TGGGCGCCGGCGCGTCGGCCGCGGAGACGGCGGAGATGGCGGCGACCGCCAGGACGGCGAGGATGGCGAGGGCCTTAGAT
CCGGCGGCGGCCATCACTTCGATTCGGTGGCTGGTCGTCGGCGGCGGCGGAGAGAAGGTTCTAGAAGGCGGAGGAATAAT
GGGGAGAGAGAGAGAGGATGTTTTGCTTGTGCTCGTGTGGAGGTGGGGGAAAGGCGTCGGGTGCGAGGGTGTTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis