Browse Element(s) Details


Os.4189.1.S1_at

Description gb:AB025310.1
DB_XREF= gi:5926739
TID=Os.4189.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.4189 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for asparaginyl endopeptidase, complete cds.
PROD=asparaginyl endopeptidase
FL= gb:AK068011.1 gb:AK067597.1 gb:AB025310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3791011/11Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37880NANA1+21534444..21537679transposon protein, putative, unclassified
LOC_Os01g37890NANA1+21538313..21544468transposon protein, putative, unclassified
LOC_Os01g37900Os.2987.3.S1_x_at8/111+21546401..21549201transposon protein, putative, unclassified
LOC_Os01g37910Os.4189.1.S1_at11/111+21557240..21561758Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
LOC_Os01g37910Os.47874.1.S1_at1/111+21557240..21561758Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
LOC_Os01g37920Os.46040.1.A1_at3/111+21568475..21569735expressed protein
LOC_Os01g37920OsAffx.11368.1.S1_at1/111+21568475..21569735expressed protein
LOC_Os01g37930NANA1+21573756..21577061retrotransposon protein, putative, unclassified
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0000323cellular_componentlytic vacuole
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4189.1.S1_at--31--9851Chr01:21560988..21561012 (25 bp)
TAAAGGCTGTTCGTGCAACTGGCGA
LOC_Os01g37910
Os.4189.1.S1_at--171--2571Chr01:21561004..21561028 (25 bp)
AACTGGCGAACCTCTTGTTGATGAC
LOC_Os01g37910
Os.4189.1.S1_at--23--1251Chr01:21561032..21561052 (21 bp)
AGTTGTCTCAAGTCTATGGTACGCA
LOC_Os01g37910
Os.4189.1.S1_at--598--811Chr01:21561250..21561272 (23 bp)
ATGGTACGCACTTTCGAAGCACAAT
LOC_Os01g37910
Os.4189.1.S1_at--596--10131Chr01:21561304..21561328 (25 bp)
TATGCGTTCCTTTGCAAACATCTGC
LOC_Os01g37910
Os.4189.1.S1_at--361--2911Chr01:21561359..21561383 (25 bp)
AAGGTTGCTGCGCAGGCTTGCACCA
LOC_Os01g37910
Os.4189.1.S1_at--143--10031Chr01:21561453..21561477 (25 bp)
TAGCAAATATTCTCAGCTCCTGCAA
LOC_Os01g37910
Os.4189.1.S1_at--759--4791Chr01:21561468..21561492 (25 bp)
GCTCCTGCAATATACCCAAGTTATC
LOC_Os01g37910
Os.4189.1.S1_at--408--2831Chr01:21561485..21561509 (25 bp)
AAGTTATCTTTTTCTCTTGCCCCTG
LOC_Os01g37910
Os.4189.1.S1_at--756--2231Chr01:21561607..21561631 (25 bp)
AAATTGTTCTCGTTCTCTGGTGTAC
LOC_Os01g37910
Os.4189.1.S1_at--382--10471Chr01:21561663..21561687 (25 bp)
TTACCTGCCATCATTGCTGTACATA
LOC_Os01g37910
Target Sequence 
TAAAGGCTGTTCGTGCAACTGGCGAACCTCTTGTTGATGACTGGAGTTGTCTCAAGTCTATGGTACGCACTTTCGAAGCA
CAATGCGGCTCGCTAGCGCAGTATGGAATGAAGCATATGCGTTCCTTTGCAAACATCTGCAATGCTGGCATCTCTGCTGA
AGCGATGGCAAAGGTTGCTGCGCAGGCTTGCACCAGCATTCCCTCCAACCCCTGGAGTTCCACCCATAGGGGTTTTAGTG
CTTAAATCATAGGTGAAGAAAACTTAGCAAATATTCTCAGCTCCTGCAATATACCCAAGTTATCTTTTTCTCTTGCCCCT
GTAGTTTGATGATCGATTGGGGGCAGTAGTGCTTGAACCGTAGGTGAAGTCTGAAGAACTGTGCATTATTTCAGATGCTC
CACCATCCCAAATCATCTAAATTGTTCTCGTTCTCTGGTGTACATACCATAGCAGGAAAATTGATATGGCAATATTACCT
GCCATCATTGCTGTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis