Browse Element(s) Details


Os.46040.1.A1_at

Description gb:NM_193502.1
DB_XREF= gi:34914087
GEN=B1064G04.23
TID=Os.46040.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1064G04.23 (B1064G04.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1064G04.23 (B1064G04.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g379203/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37890NANA1+21538313..21544468transposon protein, putative, unclassified
LOC_Os01g37900Os.2987.3.S1_x_at8/111+21546401..21549201transposon protein, putative, unclassified
LOC_Os01g37910Os.4189.1.S1_at11/111+21557240..21561758Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
LOC_Os01g37910Os.47874.1.S1_at1/111+21557240..21561758Vacuolar processing enzyme, gamma-isozyme precursor, putative, expressed
LOC_Os01g37920Os.46040.1.A1_at3/111+21568475..21569735expressed protein
LOC_Os01g37920OsAffx.11368.1.S1_at1/111+21568475..21569735expressed protein
LOC_Os01g37930NANA1+21573756..21577061retrotransposon protein, putative, unclassified
LOC_Os01g37940NANA1+21577664..21583819retrotransposon protein, putative, unclassified
LOC_Os01g37950Os.6768.1.S1_at9/111+21588744..21589239expressed protein
LOC_Os01g37960Os.11353.1.S1_at11/111+21592497..21597668IAA-amino acid hydrolase homolog 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46040.1.A1_at--272--551Chr01:21568825..21568849 (25 bp)
ATCCCTATGTGTACAACCCAATTAT
LOC_Os01g37920
Os.46040.1.A1_at--73--351Chr01:21568802..21568826 (25 bp)
ATACAACACATGTACAACTGGCGTG
LOC_Os01g37920
Os.46040.1.A1_at--610--1931Chr01:21568786..21568810 (25 bp)
ACTGGCGTGTAAAGTTTAGATCTAG
LOC_Os01g37920
Os.46040.1.A1_at--289--4571Chr01:21566691..21566715 (25 bp)
GCGCTGCCGCTGGACGAAGAATATG
NONE
Os.46040.1.A1_at--360--5231Chr01:21566673..21566697 (25 bp)
GAATATGTGCGATGCGATGAAAAAA
NONE
Os.46040.1.A1_at--959--2191Chr01:21566636..21566660 (25 bp)
ACAAAAGGCAGGAGCGCGCGTGTAT
NONE
Os.46040.1.A1_at--330--4571Chr01:21566621..21566645 (25 bp)
GCGCGTGTATGGTCGATCGGTTCAA
NONE
Os.46040.1.A1_at--1046--8591Chr01:21566612..21566636 (25 bp)
TGGTCGATCGGTTCAACAGCAGCAT
NONE
Os.46040.1.A1_at--754--6391Chr01:21566607..21566631 (25 bp)
GATCGGTTCAACAGCAGCATGAGAA
NONE
Os.46040.1.A1_at--230--5951Chr01:21566587..21566611 (25 bp)
GAGAAAATCGAACCGTTCGCCGAAG
NONE
Os.46040.1.A1_at--3--5451Chr01:21566578..21566602 (25 bp)
GAACCGTTCGCCGAAGCGAGCTGAA
NONE
Target Sequence 
ATCCCTATGTGTACAACCCAATTATACAACACATGTACAACTGGCGTGTAAAGTTTAGATCTAGAGGAGTAAAGTTTTGG
CATGTCACATCAGATGGCGCGCTGCCGCTGGACGAAGAATATGTGCGATGCGATGAAAAAAAAAAAGAAGAGAACAAAAG
GCAGGAGCGCGCGTGTATGGTCGATCGGTTCAACAGCAGCATGAGAAAATCGAACCGTTCGCCGAAGCGAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46040.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis