Browse Element(s) Details


Os.15657.1.S1_at

Description gb:AK100534.1
DB_XREF= gi:32985743
TID=Os.15657.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101N06, full insert sequence.
FL= gb:AK100534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1158011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11540Os.1376.1.S1_at11/113+5958709..5962209replication factor-a protein 1 containing protein, expressed
LOC_Os03g11550Os.4900.2.A1_x_at11/113+5962588..5967855expressed protein
LOC_Os03g11550Os.4900.1.S1_at6/113+5962588..5967855expressed protein
LOC_Os03g11560Os.16764.1.S1_at11/113+5973248..5976549digalactosyldiacylglycerol synthase 2, putative, expressed
LOC_Os03g11570Os.8973.1.S1_at11/113+5979008..5982883PCI domain containing protein, expressed
LOC_Os03g11580Os.15657.1.S1_at11/113+5985834..5990834expressed protein
LOC_Os03g11580Os.11750.1.A1_at1/113+5985834..5990834expressed protein
LOC_Os03g11590Os.8125.1.S1_x_at11/113+5992253..5996314integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15657.1.S1_at--427--10771Chr03:5986892..5986916 (25 bp)
TTGATAAGGTTTCTAGTTCTGTCCC
LOC_Os03g11580
Os.15657.1.S1_at--293--10051Chr03:5986879..5986903 (25 bp)
TAGTTCTGTCCCTAACAATCATATT
LOC_Os03g11580
Os.15657.1.S1_at--1000--8691Chr03:5986873..5986897 (25 bp)
TGTCCCTAACAATCATATTCCAAAA
LOC_Os03g11580
Os.15657.1.S1_at--146--7911Chr03:5986082..5986106 (25 bp)
GGATTCCGGGTAATAGTTCTGCAGA
LOC_Os03g11580
Os.15657.1.S1_at--1084--1211Chr03:5986068..5986092 (25 bp)
AGTTCTGCAGAAATGGATGTATTTA
LOC_Os03g11580
Os.15657.1.S1_at--256--3831Chr03:5986010..5986034 (25 bp)
CTGCCTAGTCTTCATAGCCTTGTAA
LOC_Os03g11580
Os.15657.1.S1_at--22--4451Chr03:5985994..5986018 (25 bp)
GCCTTGTAAGATGTATCTTTGCTCC
LOC_Os03g11580
Os.15657.1.S1_at--647--9551Chr03:5985955..5985979 (25 bp)
TCTTTTCTTTTGAGTAGTTTGCTCT
LOC_Os03g11580
Os.15657.1.S1_at--215--1211Chr03:5985940..5985964 (25 bp)
AGTTTGCTCTACTATTTCACCATCA
LOC_Os03g11580
Os.15657.1.S1_at--685--4811Chr03:5985935..5985959 (25 bp)
GCTCTACTATTTCACCATCATTAGG
LOC_Os03g11580
Os.15657.1.S1_at--929--5451Chr03:5985898..5985922 (25 bp)
GAACGTTCTTTAATACTGACTGCAT
LOC_Os03g11580
Target Sequence 
TTGATAAGGTTTCTAGTTCTGTCCCTAACAATCATATTCCAAAAACNCCAGCCNNNGATCAAGCAGTATGNTCCAGTCCT
CTCAAAAGAAAGTGACCAANCTTGTAATGGGCNTATGTTGACAAATATGTGAAGCTATAGNTTGGATCAGTAAATGGGNA
CTATNGAACTGGAGCAATCANGGACAGNGTCCNTTTTCCTGNTTGCAGAAANTCGNGATGGGANTATGGACTNTNGAANC
AGCTCACACGAATCTGANGCTATGCTNATGGTATTTNNTGGATCATCAATTTGCANGTCTTTCAGCNGTAAGGGATTCCG
GGTAATAGTTCTGCAGAAATGGATGTATTTATCAGAAAATCACGAGTTTACNTTGGAACNANNTTGCTGCCTAGTCTTCA
TAGCCTTGTAAGATGTATCTTTGCTCCNCTGTTTCTTTTTTTCTTTTCTTTTGAGTAGTTTGCTCTACTATTTCACCATC
ATTAGGCANNTGATAGTAGAACGTTCTTTAATACTGACTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis