Browse Element(s) Details


Os.15760.1.S1_at

Description gb:AK111016.1
DB_XREF= gi:32996225
TID=Os.15760.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G05, full insert sequence.
FL= gb:AK111016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4417411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified
LOC_Os12g44210Os.56885.1.S1_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_s_at11/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.32185.1.S1_x_at2/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44210OsAffx.25760.1.S1_x_at1/1112+27388895..27390394Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15760.1.S1_at--861--7531Chr12:27369277..27369301 (25 bp)
GGGCCTCTTTGGTCGTTCCAGCCGG
LOC_Os12g44174
Os.15760.1.S1_at--662--10651Chr12:27369406..27369430 (25 bp)
TTCCTCGTCCTTTCTACTAGGAGTA
LOC_Os12g44174
Os.15760.1.S1_at--1100--1171Chr12:27369441..27369465 (25 bp)
AGTAGTACTAGGTTCCAAGGAGACA
LOC_Os12g44174
Os.15760.1.S1_at--597--731Chr12:27369609..27369633 (25 bp)
ATGTTCCGTGGCTTGCGGGAGAATC
LOC_Os12g44174
Os.15760.1.S1_at--248--8491Chr12:27369617..27369641 (25 bp)
TGGCTTGCGGGAGAATCCAATCCTC
LOC_Os12g44174
Os.15760.1.S1_at--440--3191Chr12:27369634..27369658 (25 bp)
CAATCCTCCTTCAGAGCCAGAGGAA
LOC_Os12g44174
Os.15760.1.S1_at--301--2371Chr12:27369666..27369690 (25 bp)
AAACCTTTTCTCTCAGACTCCTGGA
LOC_Os12g44174
Os.15760.1.S1_at--39--5731Chr12:27369681..27369705 (25 bp)
GACTCCTGGAACTTGTCACGCAAGA
LOC_Os12g44174
Os.15760.1.S1_at--1101--2631Chr12:27369717..27369741 (25 bp)
AACCAATCTAATCTGTTGTTCCGAT
LOC_Os12g44174
Os.15760.1.S1_at--331--8811Chr12:27369730..27369754 (25 bp)
TGTTGTTCCGATTTCTGAATCTTTC
LOC_Os12g44174
Os.15760.1.S1_at--441--9891Chr12:27369787..27369811 (25 bp)
TACTACAGTTTATCGGGTTTGACCG
LOC_Os12g44174
Target Sequence 
GGGCCTCTTTGGTCGTTCCAGCCGGCGGCGGCGCGCTCTCGGCTCCAACGCCAGCCGCGCCACCCAGCAATCGCACGGCG
GGAGACCCAGCTGGACGGCGGCGGCGTTCGGCAACCCCTCTTCTGCCTCTTCCTCGTCCTTTCTACTAGGAGTAGTACCT
AGCTAGTAGTACTAGGTTCCAAGGAGACATGGAGAGCAGAGGAGGAGCGGCGTGAGGAGGAGGAGCAACAACAACGAAGA
AGAAGAAAGATGCGATGCGATGCGATCCCGTGTCCCTCCCTCCCGGAGACGCGGCAGCGGCGGCGCACGGGTGGGGTGGG
TGGGGATTGGGGATGTTCCGTGGCTTGCGGGAGAATCCAATCCTCCTTCAGAGCCAGAGGAAAGAGAGCAAACCTTTTCT
CTCAGACTCCTGGAACTTGTCACGCAAGAATAATAATCTCAACCAATCTAATCTGTTGTTCCGATTTCTGAATCTTTCAT
TATTAGTATCTTTTTATTCAAAACAATAAATACTACAGTTTATCGGGTTTGACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis