Browse Element(s) Details


Os.15764.1.S1_at

Description gb:AK061302.1
DB_XREF= gi:32971320
TID=Os.15764.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F06, full insert sequence.
FL= gb:AK061302.1 gb:AK104161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2645011/11F-actin capping protein beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26400OsAffx.21897.5.S1_x_at4/113+15067056..15069980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0008290cellular_componentF-actin capping protein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15764.1.S1_at--236--3911Chr03:15095621..15095645 (25 bp)
CTGGAACTTTCAACTTGTCGGGATC
LOC_Os03g26450
Os.15764.1.S1_at--941--8891Chr03:15096443..15096467 (25 bp)
TGAGTATGACTCTTGCTGTGGCAGA
LOC_Os03g26450
Os.15764.1.S1_at--807--6011Chr03:15096676..15096700 (25 bp)
GAGAGATGGTTTGCACGCTTCGGCC
LOC_Os03g26450
Os.15764.1.S1_at--701--8391Chr03:15096697..15096721 (25 bp)
GGCCACCACCCGAAGTATTAAACAG
LOC_Os03g26450
Os.15764.1.S1_at--495--151Chr03:15096781..15096805 (25 bp)
ATTAGTCTTGCAATCATCTCCTTAG
LOC_Os03g26450
Os.15764.1.S1_at--506--1651Chr03:15096804..15096828 (25 bp)
AGCGACCTAGAGTCTCTTTTCGTAA
LOC_Os03g26450
Os.15764.1.S1_at--237--8531Chr03:15096862..15096886 (25 bp)
TGGACACCACTTTGAGCCATCATAG
LOC_Os03g26450
Os.15764.1.S1_at--819--6111Chr03:15096887..15096911 (25 bp)
GAGTGTCTTCTCCATTGAATTGTGA
LOC_Os03g26450
Os.15764.1.S1_at--792--2551Chr03:15096915..15096939 (25 bp)
AACTGGGCAAAGCTTCTTCATGGCA
LOC_Os03g26450
Os.15764.1.S1_at--963--10251Chr03:15096976..15097000 (25 bp)
TTTGCATTTGCCGAACTCGTTGTCA
LOC_Os03g26450
Os.15764.1.S1_at--978--6411Chr03:15097037..15097061 (25 bp)
GATCTACATCTTCTTGTGACCTTAC
LOC_Os03g26450
Target Sequence 
CTGGAACTTTCAACTTGTCGGGATCAATCAGGCGGCAGATGAGTATGACTCTTGCTGTGGCAGATGGGCACCTGGTTAAT
ATGGGAAAAATGATAGAAGAAATGGAGGGCAAGCTCAGAAATTCGTTGGACCAGGTTTATTTTGGGAAGACCAGAGAGAT
GGTTTGCACGCTTCGGCCACCACCCGAAGTATTAAACAGGAGGCTACCTGACAGCTGAGAAAACGCAGAGATGTGAATTT
TTAACACAAGAACTATATATTAGTCTTGCAATCATCTCCTTAGCGACCTAGAGTCTCTTTTCGTAATTGATCTGTATTTA
ATAGTAGCAGTCTCTAAAATGGACACCACTTTGAGCCATCATAGGAGTGTCTTCTCCATTGAATTGTGAGGAAACTGGGC
AAAGCTTCTTCATGGCAGCTGTAACAGAGAGTTTAAGCAAAAGGGAGCAGGAGTTTGCATTTGCCGAACTCGTTGTCACT
GCCCCTGAGAGCAATATTCTGTCATCTTTGTGAAGATCTACATCTTCTTGTGACCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis