Browse Element(s) Details


OsAffx.13056.1.S1_at

Description tigr:9631.m02601
TID=OsAffx.13056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2648011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein
LOC_Os03g26520OsAffx.13058.1.S1_at11/113+15125408..15126146hypothetical protein
LOC_Os03g26530Os.7669.1.S1_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26530OsAffx.13059.1.S1_s_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13056.1.S1_at--116--4331Chr03:15105247..15105271 (25 bp)
GTCACTTCCAGGAGTCGGTCCACCT
LOC_Os03g26480
OsAffx.13056.1.S1_at--1024--6371Chr03:15105286..15105310 (25 bp)
GATCCCAGGTCTTCCGGCAGGCTTT
LOC_Os03g26480
OsAffx.13056.1.S1_at--624--6691Chr03:15105344..15105368 (25 bp)
GTTCCAGGAGTCATTTGTCGACCTC
LOC_Os03g26480
OsAffx.13056.1.S1_at--1155--5691Chr03:15105459..15105483 (25 bp)
GACTCATCGGGAGAGGCGAAGCCAT
LOC_Os03g26480
OsAffx.13056.1.S1_at--549--9431Chr03:15105465..15105489 (25 bp)
TCGGGAGAGGCGAAGCCATCACCCT
LOC_Os03g26480
OsAffx.13056.1.S1_at--70--2491Chr03:15105541..15105565 (25 bp)
AACACCAGTGGCACAGCACAAGCGG
LOC_Os03g26480
OsAffx.13056.1.S1_at--529--8511Chr03:15105549..15105573 (25 bp)
TGGCACAGCACAAGCGGACGGAGTT
LOC_Os03g26480
OsAffx.13056.1.S1_at--625--9471Chr03:15105631..15105655 (25 bp)
TCTGTCCTCTGCACCGAAGCAGCAT
LOC_Os03g26480
OsAffx.13056.1.S1_at--1150--2711Chr03:15105647..15105671 (25 bp)
AAGCAGCATCCCGAATCAGAGGCAC
LOC_Os03g26480
OsAffx.13056.1.S1_at--574--6651Chr03:15105745..15105769 (25 bp)
GTTGATCATCAACGTGCTCTACGGT
LOC_Os03g26480
OsAffx.13056.1.S1_at--579--9711Chr03:15105753..15105777 (25 bp)
TCAACGTGCTCTACGGTCCGACCAA
LOC_Os03g26480
Target Sequence 
GTCACTTCCAGGAGTCGGTCCACCTCGAGGCGGCGGCGCGATCCCAGGTCTTCCGGCAGGCTTTCCTTTCCTCCTCCGGC
CGCCGCCGCCACTTCCAGTTCCAGGAGTCATTTGTCGACCTCCTCCAAGCCCTCCTTACTTCGCGCCGCCGCCGAGAGCC
ACCCCGACCGTCTCCTTAGCCGGACCGCCGCCCGGTTTCAACCCGAAGAGGGGACTCATCGGGAGAGGCGAAGCCATCAC
CCTCCCAGAGTCAGAGCGACCAACGCCACCGCCGCCGCCGCCGCCGCTGCCACCAACACCAGTGGCACAGCACAAGCGGA
CGGAGTTCTCGTGGCCGCCGAAGACCACCGCCCCCGCCGTCACCCTCCTGACGAGAGCGCCGCCTCTGTCCTCTGCACCG
AAGCAGCATCCCGAATCAGAGGCACCGCCGCTGGCGCCGTCGTCTGCTCCGAGCCCCCGGGAGGAGTTCGCGTGGCCGCT
GACCGACGAGGAGGACGAGTTGATCATCAACGTGCTCTACGGTCCGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis