Browse Element(s) Details


OsAffx.13059.1.S1_s_at

Description tigr:9631.m02606
TID=OsAffx.13059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative fatty acid elongase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2653011/11beta-ketoacyl-CoA synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein
LOC_Os03g26520OsAffx.13058.1.S1_at11/113+15125408..15126146hypothetical protein
LOC_Os03g26530Os.7669.1.S1_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26530OsAffx.13059.1.S1_s_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26540Os.19099.1.S1_x_at1/113+15134881..15135542retrotransposon, putative, centromere-specific
LOC_Os03g26550OsAffx.13060.1.S1_at11/113+15144223..15144943hypothetical protein
LOC_Os03g26560Os.24831.1.S1_x_at9/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_x_at6/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.4.S1_x_at2/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_s_at1/113+15147163..15150024retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13059.1.S1_s_at--754--8371Chr03:15129759..15129783 (25 bp)
GGCGACGGGCCCAGGATCAACTTCA
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--408--5731Chr03:15129762..15129786 (25 bp)
GACGGGCCCAGGATCAACTTCAAGA
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--40--7571Chr03:15129765..15129789 (25 bp)
GGGCCCAGGATCAACTTCAAGACGG
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--498--7951Chr03:15129772..15129796 (25 bp)
GGATCAACTTCAAGACGGGCGTGGA
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--955--2751Chr03:15129783..15129807 (25 bp)
AAGACGGGCGTGGACCACTTCTGCC
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--440--5751Chr03:15129785..15129809 (25 bp)
GACGGGCGTGGACCACTTCTGCCTC
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--1057--8411Chr03:15129824..15129848 (25 bp)
GGCCGTGATCGAGGCCGTGAAGCGC
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--1100--4971Chr03:15130078..15130102 (25 bp)
GCATCGACGCCTACCCGCCGGAGAA
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--120--8071Chr03:15130097..15130121 (25 bp)
GGAGAACACGGCCAACCCCTACATG
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--1011--5471Chr03:15130100..15130124 (25 bp)
GAACACGGCCAACCCCTACATGGAG
LOC_Os03g26530
OsAffx.13059.1.S1_s_at--372--3731Chr03:15130115..15130139 (25 bp)
CTACATGGAGAAGTATTCGTGGATC
LOC_Os03g26530
Target Sequence 
GGCGACGGGCCCAGGATCAACTTCAAGACGGGCGTGGACCACTTCTGCCTCCACCCCGGCGGCACGGCCGTGATCGAGGC
CGTGAAGCGCAGCCTGGGCCTCGACGACGACGACGTGGAGCCGGCGAGGATGACGCTGCACCGGTGGGGGAACACGTCGG
CGAGCAGCCTGTGGTACGTGCTGTCGTACATGGAGGCGAAGGGGAGGCTGAGGCGGGGCGACAAGGTGCTGATGGTGACG
TTCGGGTCGGGGTTCAAGTGCAACAGCTGCGTGTGGGAGGTGACCGGCGACATGGCCGACAAGGGCGCGTGGGCCGACTG
CATCGACGCCTACCCGCCGGAGAACACGGCCAACCCCTACATGGAGAAGTATTCGTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13059.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis