Browse Element(s) Details


OsAffx.13058.1.S1_at

Description tigr:9631.m02605
TID=OsAffx.13058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2652011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein
LOC_Os03g26520OsAffx.13058.1.S1_at11/113+15125408..15126146hypothetical protein
LOC_Os03g26530Os.7669.1.S1_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26530OsAffx.13059.1.S1_s_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26540Os.19099.1.S1_x_at1/113+15134881..15135542retrotransposon, putative, centromere-specific
LOC_Os03g26550OsAffx.13060.1.S1_at11/113+15144223..15144943hypothetical protein
LOC_Os03g26560Os.24831.1.S1_x_at9/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_x_at6/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.4.S1_x_at2/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_s_at1/113+15147163..15150024retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13058.1.S1_at--596--2631Chr03:15126052..15126076 (25 bp)
AACCTGCGGCGGGAACCAGCAACGG
LOC_Os03g26520
OsAffx.13058.1.S1_at--733--951Chr03:15125824..15125848 (25 bp)
AGGACGGCAGCATCCACACCCAGCG
LOC_Os03g26520
OsAffx.13058.1.S1_at--658--9912Chr03:15125665..15125689 (25 bp)
TACGCAGTTCCCCTAACCCTAGATC
LOC_Os03g26520
OsAffx.13058.1.S1_at--809--1811Chr03:15125517..15125674 (25 bp)
ACCCTAGATCGGCTAGAGCTTATCT
LOC_Os03g26520
OsAffx.13058.1.S1_at--581--491Chr03:15125510..15125667 (25 bp)
ATCGGCTAGAGCTTATCTTTGTGCG
LOC_Os03g26520
OsAffx.13058.1.S1_at--274--8291Chr03:15125507..15125664 (25 bp)
GGCTAGAGCTTATCTTTGTGCGGAC
LOC_Os03g26520
OsAffx.13058.1.S1_at--665--10031Chr03:15125504..15125525 (22 bp)
TAGAGCTTATCTTTGTGCGGACGAT
LOC_Os03g26520
OsAffx.13058.1.S1_at--706--4891Chr03:15125500..15125524 (25 bp)
GCTTATCTTTGTGCGGACGATGAAT
LOC_Os03g26520
OsAffx.13058.1.S1_at--852--10771Chr03:15125492..15125516 (25 bp)
TTGTGCGGACGATGAATTAGGATAC
LOC_Os03g26520
OsAffx.13058.1.S1_at--770--3911Chr03:15125487..15125511 (25 bp)
CGGACGATGAATTAGGATACAGAGT
LOC_Os03g26520
OsAffx.13058.1.S1_at--156--2191Chr03:15125438..15125462 (25 bp)
AAAACCGGGTGAGATGTTCCTAGAT
LOC_Os03g26520
Target Sequence 
AACCTGCGGCGGGAACCAGCAACGGCGACACGCAGAGGCGGCGGGGTCAGCGCCGGCGAGGGCGGGGTCAGCGGCGGGAA
CGGCGAGGCAGCGGGGTCGGCGGTGGCAACGGCAAGGCGCGGGGTCAGTGGCAGCAGCGGCGAGGTGGCGGGGTCGGCAG
TGGCAACGGCGAGGCGCGGGGTCGGCGGCGACAACGACGAGGCCCGGGGACGGCGACGACAATGCTCGAGGACGGCAGCA
TCCACACCCAGCGCGGCTCCCCTCCCCTCCCTCCCAGATCCGGCCAAAGGGGAGGAGAGGAAGGAGAGGTGGCGGCGGCT
GCCCCTGGAGGTGGCGGCAGGCGGTGGCGGCGGCGGCGCCCCCCACCCCCGACGGCGGCGGCACCCCTACGCAGTTCCCC
TAACCCTAGATCGGCTAGAGCTTATCTTTGTGCGGACGATGAATTAGGATACAGAGTAGGGGTGAAGGAGAAGATTGGAG
TAAAACCGGGTGAGATGTTCCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis