Browse Element(s) Details


OsAffx.13060.1.S1_at

Description tigr:9631.m02608
TID=OsAffx.13060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2655011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26520OsAffx.13058.1.S1_at11/113+15125408..15126146hypothetical protein
LOC_Os03g26530Os.7669.1.S1_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26530OsAffx.13059.1.S1_s_at11/113+15128709..15130711beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os03g26540Os.19099.1.S1_x_at1/113+15134881..15135542retrotransposon, putative, centromere-specific
LOC_Os03g26550OsAffx.13060.1.S1_at11/113+15144223..15144943hypothetical protein
LOC_Os03g26560Os.24831.1.S1_x_at9/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_x_at6/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.4.S1_x_at2/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_s_at1/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26570NANA3+15157634..15161856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g26580OsAffx.30280.1.S1_x_at1/113+15162863..15164558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26590Os.54920.1.S1_at11/113+15167875..15174618expressed protein
LOC_Os03g26590Os.38751.1.A1_at3/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.30274.1.A1_x_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.28492.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.1198.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.19660.1.S1_at1/113+15167875..15174618expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13060.1.S1_at--743--6251Chr03:15144253..15144277 (25 bp)
GATGGTGATCAACGGATTTTGACAG
LOC_Os03g26550
OsAffx.13060.1.S1_at--65--6551Chr03:15144267..15144291 (25 bp)
GATTTTGACAGGTGGATCGGACACT
LOC_Os03g26550
OsAffx.13060.1.S1_at--931--10491Chr03:15144291..15144315 (25 bp)
TTCAGGCGACGGTATGAACCGTTCA
LOC_Os03g26550
OsAffx.13060.1.S1_at--937--4011Chr03:15144310..15144334 (25 bp)
CGTTCAGTGGTTGTTTTCAACAGGG
LOC_Os03g26550
OsAffx.13060.1.S1_at--272--10511Chr03:15144325..15144349 (25 bp)
TTCAACAGGGAGACAACCAGACATG
LOC_Os03g26550
OsAffx.13060.1.S1_at--779--4351Chr03:15144341..15144365 (25 bp)
CCAGACATGGTGTTCGGGTTGATGC
LOC_Os03g26550
OsAffx.13060.1.S1_at--861--3231Chr03:15144386..15144410 (25 bp)
CAACCGGTGGGTCAGAAACTTCAGG
LOC_Os03g26550
OsAffx.13060.1.S1_at--720--3651Chr03:15144404..15144428 (25 bp)
CTTCAGGCGGGCGATTCAATAGGAA
LOC_Os03g26550
OsAffx.13060.1.S1_at--215--951Chr03:15144424..15144448 (25 bp)
AGGAAGACGTGTGGTCGCACGCTCA
LOC_Os03g26550
OsAffx.13060.1.S1_at--32--8611Chr03:15144435..15144459 (25 bp)
TGGTCGCACGCTCAGGTTGATTGAA
LOC_Os03g26550
OsAffx.13060.1.S1_at--1083--7491Chr03:15144660..15144684 (25 bp)
GTGGATCCTTGAGGTTGCTTTAGGA
LOC_Os03g26550
Target Sequence 
GATGGTGATCAACGGATTTTGACAGGTGGATCGGACACTTCAGGCGACGGTATGAACCGTTCAGTGGTTGTTTTCAACAG
GGAGACAACCAGACATGGTGTTCGGGTTGATGCGATGGAAGCGATTGGCGATCCAACCGGTGGGTCAGAAACTTCAGGCG
GGCGATTCAATAGGAAGACGTGTGGTCGCACGCTCAGGTTGATTGAAGCTGGAGGTCAATGTGGGTGGATCCTTGAGGTT
GCTTTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis