Browse Element(s) Details


OsAffx.19660.1.S1_at

Description tigr:9640.m01358
TID=OsAffx.19660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1403011/11hypothetical protein
LOC_Os03g265901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13990Os.53142.1.S1_at2/1112+7947081..7953704retrotransposon protein, putative, unclassified
LOC_Os12g13990Os.31929.3.S1_x_at2/1112+7947081..7953704retrotransposon protein, putative, unclassified
LOC_Os12g13990OsAffx.1651.1.S1_at1/1112+7947081..7953704retrotransposon protein, putative, unclassified
LOC_Os12g13990OsAffx.1651.1.S1_x_at1/1112+7947081..7953704retrotransposon protein, putative, unclassified
LOC_Os12g14000NANA12+7955709..7956482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14010Os.24831.3.S1_s_at11/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14010Os.24831.3.S1_x_at7/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14010Os.24831.1.S1_x_at6/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14010Os.24831.4.S1_x_at2/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14020NANA12+7963028..7963801retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14030OsAffx.19660.1.S1_at11/1112+7966295..7966555hypothetical protein
LOC_Os12g14040NANA12+7969204..7969680retrotransposon protein, putative, unclassified
LOC_Os12g14050NANA12+7970017..7973194hypothetical protein
LOC_Os12g14060NANA12+7977265..7977936retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14070Os.7977.1.S1_at11/1112+7983582..7989353Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os12g14080Os.12353.1.S1_at11/1112+7990304..7992128expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19660.1.S1_at--761--6113Chr03:15171544..15171568 (25 bp)
GAGGGCTGGCCGAGGTTCTTCTCCT
LOC_Os03g26590
OsAffx.19660.1.S1_at--955--3251Chr12:7966483..7966507 (25 bp)
CAACGGCGATCGAAGGCGGCAACTG
LOC_Os12g14030
OsAffx.19660.1.S1_at--256--4711Chr12:7966395..7966419 (25 bp)
GCGGCGCTCCGGTGATCTGTGGTGG
LOC_Os12g14030
OsAffx.19660.1.S1_at--830--4571Chr12:7966392..7966416 (25 bp)
GCGCTCCGGTGATCTGTGGTGGAAA
LOC_Os12g14030
OsAffx.19660.1.S1_at--530--4791Chr12:7966390..7966414 (25 bp)
GCTCCGGTGATCTGTGGTGGAAAAG
LOC_Os12g14030
OsAffx.19660.1.S1_at--505--711Chr12:7966330..7966354 (25 bp)
ATGATGAAGGAGACTGTCACGACCG
LOC_Os12g14030
OsAffx.19660.1.S1_at--738--8851Chr12:7966329..7966353 (25 bp)
TGATGAAGGAGACTGTCACGACCGA
LOC_Os12g14030
OsAffx.19660.1.S1_at--1088--6311Chr12:7966328..7966352 (25 bp)
GATGAAGGAGACTGTCACGACCGAG
LOC_Os12g14030
OsAffx.19660.1.S1_at--498--351Chr12:7966327..7966351 (25 bp)
ATGAAGGAGACTGTCACGACCGAGA
LOC_Os12g14030
OsAffx.19660.1.S1_at--1000--8991Chr12:7966326..7966350 (25 bp)
TGAAGGAGACTGTCACGACCGAGAA
LOC_Os12g14030
OsAffx.19660.1.S1_at--286--5311Chr12:7966325..7966349 (25 bp)
GAAGGAGACTGTCACGACCGAGAAA
LOC_Os12g14030
Target Sequence 
GAGGGCTGGCCGAGGTTCTTCTCCTCCTCGCGAACCCGATGGTGGCAACGGCGATCGAAGGCGGCAACTGCAATGGCGGC
GCTGCGCGGCTGGACCGACGGCGACGGTGGAGAGCTTCGGGTCGACGGTGTCGGCGGCGCTCCGGTGATCTGTGGTGGAA
AAGGAGAACGGGACGAGGACGGCGACGACCTCGCGATGATGATGAAGGAGACTGTCACGACCGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis