Browse Element(s) Details


Os.7977.1.S1_at

Description gb:AK121949.1
DB_XREF= gi:37991572
TID=Os.7977.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.7977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23949 heat shock-related protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107J07, full insert sequence.
FL= gb:AK121949.1 gb:AK069937.1 gb:AK072071.1 gb:AK119535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1407011/11Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14010Os.24831.3.S1_s_at11/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14010Os.24831.3.S1_x_at7/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14010Os.24831.1.S1_x_at6/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14010Os.24831.4.S1_x_at2/1112+7959511..7960810retrotransposon protein, putative, unclassified
LOC_Os12g14020NANA12+7963028..7963801retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14030OsAffx.19660.1.S1_at11/1112+7966295..7966555hypothetical protein
LOC_Os12g14040NANA12+7969204..7969680retrotransposon protein, putative, unclassified
LOC_Os12g14050NANA12+7970017..7973194hypothetical protein
LOC_Os12g14060NANA12+7977265..7977936retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14070Os.7977.1.S1_at11/1112+7983582..7989353Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os12g14080Os.12353.1.S1_at11/1112+7990304..7992128expressed protein
LOC_Os12g14090OsAffx.19661.1.S1_at11/1112+7992805..7994128hypothetical protein
LOC_Os12g14100Os.52989.1.S1_at11/1112+7994789..7997771lysine and histidine specific transporter, putative, expressed
LOC_Os12g14110Os.5749.1.S1_at11/1112+7997904..8001880expressed protein
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0009532cellular_componentplastid stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7977.1.S1_at--773--2191Chr12:7988669..7988693 (25 bp)
ACAAGGTACCTGCACCTGTGAAAGA
LOC_Os12g14070
Os.7977.1.S1_at--79--891Chr12:7988726..7988750 (25 bp)
AGGCCATTGCGGGTGGATCAACACA
LOC_Os12g14070
Os.7977.1.S1_at--702--7971Chr12:7988760..7988784 (25 bp)
GGATGCCATGGCTGCTTTAAACGAG
LOC_Os12g14070
Os.7977.1.S1_at--504--2831Chr12:7988786..7988810 (25 bp)
AAGTTATGCAGATCGGCCAGGCCAT
LOC_Os12g14070
Os.7977.1.S1_at--720--1991Chr12:7988848..7988872 (25 bp)
ACTCCTGGTGCCGATGCTGGACCGA
LOC_Os12g14070
Os.7977.1.S1_at--841--4711Chr12:7988863..7988887 (25 bp)
GCTGGACCGACAAGCTCAGGCGGTA
LOC_Os12g14070
Os.7977.1.S1_at--527--10231Chr12:7988910..7988934 (25 bp)
TATTGATGCGGATTTCACTGACAGC
LOC_Os12g14070
Os.7977.1.S1_at--627--3671Chr12:7989045..7989069 (25 bp)
CTTTTTGTTTACTATGGATCCCATG
LOC_Os12g14070
Os.7977.1.S1_at--550--7971Chr12:7989060..7989084 (25 bp)
GGATCCCATGTTCAATAGGCTCTTT
LOC_Os12g14070
Os.7977.1.S1_at--23--6491Chr12:7989097..7989121 (25 bp)
GATAGCGTAGGGTTTTGCCAACATT
LOC_Os12g14070
Os.7977.1.S1_at--38--6611Chr12:7989203..7989227 (25 bp)
GATTGATATGACCTTGTTCCTTGAA
LOC_Os12g14070
Target Sequence 
ACAAGGTACCTGCACCTGTGAAAGAGAAGGTGGATGCAAAGCTCAACGAGCTCAAAGAGGCCATTGCGGGTGGATCAACA
CAGAGCATGAAGGATGCCATGGCTGCTTTAAACGAGGAAGTTATGCAGATCGGCCAGGCCATGTACAACCAGCAGCCTAA
TGCTGGTGCTGCTGGACCTACTCCTGGTGCCGATGCTGGACCGACAAGCTCAGGCGGTAAGGGACCGAATGATGGAGATG
TTATTGATGCGGATTTCACTGACAGCAATTGATAGTTCTAGCGATTGAAGATTATTGATGGAAGGATGANTCTGTGGTGG
ATGGCTGTGAGGGTCTGATGGGTGATGGTATAGGAAGAAGGGAGTGAACAAATTGTTCTTTTTGTTTACTATGGATCCCA
TGTTCAATAGGCTCTTTAGTTTGCAATTTGATAGCGTAGGGTTTTGCCAACATTTTCCTGTGATGTTGAATGAAGGATTA
TAAAAAGTAGCCTTCAAAAAAAGAGGAGGCAAAGGTTTTGATCGAAGAAGTAGCTGATTGATATGACCTTGTTCCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis