Browse Element(s) Details


OsAffx.19661.1.S1_at

Description tigr:9640.m01364
TID=OsAffx.19661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1409011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14040NANA12+7969204..7969680retrotransposon protein, putative, unclassified
LOC_Os12g14050NANA12+7970017..7973194hypothetical protein
LOC_Os12g14060NANA12+7977265..7977936retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14070Os.7977.1.S1_at11/1112+7983582..7989353Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os12g14080Os.12353.1.S1_at11/1112+7990304..7992128expressed protein
LOC_Os12g14090OsAffx.19661.1.S1_at11/1112+7992805..7994128hypothetical protein
LOC_Os12g14100Os.52989.1.S1_at11/1112+7994789..7997771lysine and histidine specific transporter, putative, expressed
LOC_Os12g14110Os.5749.1.S1_at11/1112+7997904..8001880expressed protein
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19661.1.S1_at--551--1351Chr12:7992847..7992871 (25 bp)
AGAGATGAGGGCAACGATAAAAACT
LOC_Os12g14090
OsAffx.19661.1.S1_at--236--6471Chr12:7992862..7992886 (25 bp)
GATAAAAACTATGGCGAGCTGGCGC
LOC_Os12g14090
OsAffx.19661.1.S1_at--676--5891Chr12:7992877..7992901 (25 bp)
GAGCTGGCGCCCTTGACAGCTCTTG
LOC_Os12g14090
OsAffx.19661.1.S1_at--989--5031Chr12:7992906..7992930 (25 bp)
GCAGAGGACGTACAGTGCAGCGGCT
LOC_Os12g14090
OsAffx.19661.1.S1_at--929--4671Chr12:7992964..7992988 (25 bp)
GCGGTTTCTGGCGTTAGCACGTGCA
LOC_Os12g14090
OsAffx.19661.1.S1_at--1047--10291Chr12:7992968..7992992 (25 bp)
TTTCTGGCGTTAGCACGTGCAGGAG
LOC_Os12g14090
OsAffx.19661.1.S1_at--20--4651Chr12:7992974..7992998 (25 bp)
GCGTTAGCACGTGCAGGAGCAGAAT
LOC_Os12g14090
OsAffx.19661.1.S1_at--416--7631Chr12:7994046..7994070 (25 bp)
GGGACACACAAGACAGGCTTCAACG
LOC_Os12g14090
OsAffx.19661.1.S1_at--366--2751Chr12:7994055..7994079 (25 bp)
AAGACAGGCTTCAACGGGACGCGGC
LOC_Os12g14090
OsAffx.19661.1.S1_at--871--4811Chr12:7994062..7994086 (25 bp)
GCTTCAACGGGACGCGGCTTTGTTA
LOC_Os12g14090
OsAffx.19661.1.S1_at--911--5771Chr12:7994072..7994096 (25 bp)
GACGCGGCTTTGTTAAAGACGGTGG
LOC_Os12g14090
Target Sequence 
AGAGATGAGGGCAACGATAAAAACTATGGCGAGCTGGCGCCCTTGACAGCTCTTGCGGGGCAGAGGACGTACAGTGCAGC
GGCTAATAGGGAGGGGAGCGCTGATAAGCATGGCGGAGCGGTTTCTGGCGTTAGCACGTGCAGGAGCAGAATTGGGGAGA
GGCGCAGGGGTGAGTGGGGATGTGGTGCACGATTGAGAGAGAAATCGGGGGACACACAAGACAGGCTTCAACGGGACGCG
GCTTTGTTAAAGACGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis