Browse Element(s) Details


Os.52989.1.S1_at

Description gb:AK070297.1
DB_XREF= gi:32980321
TID=Os.52989.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052C04, full insert sequence.
FL= gb:AK070297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1410011/11lysine and histidine specific transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14050NANA12+7970017..7973194hypothetical protein
LOC_Os12g14060NANA12+7977265..7977936retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14070Os.7977.1.S1_at11/1112+7983582..7989353Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os12g14080Os.12353.1.S1_at11/1112+7990304..7992128expressed protein
LOC_Os12g14090OsAffx.19661.1.S1_at11/1112+7992805..7994128hypothetical protein
LOC_Os12g14100Os.52989.1.S1_at11/1112+7994789..7997771lysine and histidine specific transporter, putative, expressed
LOC_Os12g14110Os.5749.1.S1_at11/1112+7997904..8001880expressed protein
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14140Os.53747.1.S1_at11/1112+8022569..8024801expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52989.1.S1_at--987--7131Chr12:7996921..7996941 (21 bp)
GTCTTGTTCACCATGTTCGTTGCCA
LOC_Os12g14100
Os.52989.1.S1_at--840--5711Chr12:7996963..7996987 (25 bp)
GACTGCTAGGCTTCTTTGGTGGCTT
LOC_Os12g14100
Os.52989.1.S1_at--57--5851Chr12:7997003..7997153 (25 bp)
GACCTACTTCTTGCCATGCATTATG
LOC_Os12g14100
Os.52989.1.S1_at--814--8491Chr12:7997183..7997207 (25 bp)
TGGCTTGTCCTGGTGCATCAACTGG
LOC_Os12g14100
Os.52989.1.S1_at--65--3571Chr12:7997198..7997351 (25 bp)
CATCAACTGGTTCTGCATCATCATC
LOC_Os12g14100
Os.52989.1.S1_at--351--9391Chr12:7997394..7997418 (25 bp)
TCGATCATCGTGAATGCCCAGAGTT
LOC_Os12g14100
Os.52989.1.S1_at--133--5971Chr12:7997546..7997570 (25 bp)
GAGAAATTCGTGTGTCCCTATGAGA
LOC_Os12g14100
Os.52989.1.S1_at--980--10191Chr12:7997619..7997643 (25 bp)
TATTTGGCCTTTGTTTGTCGATCTA
LOC_Os12g14100
Os.52989.1.S1_at--669--91Chr12:7997663..7997687 (25 bp)
ATTCGTGTCGAGTTTATCCCAATTT
LOC_Os12g14100
Os.52989.1.S1_at--549--391Chr12:7997710..7997734 (25 bp)
ATCACGTGGTGTGGCATTCGTTTTA
LOC_Os12g14100
Os.52989.1.S1_at--489--8771Chr12:7997743..7997767 (25 bp)
TGATTGGTTCAAACTTCGTCCTAGT
LOC_Os12g14100
Target Sequence 
GTCTTGTTCACCATGTTCGTTGCCATCGCGGTCCCTTTCTTTGGTGGACTGCTAGGCTTCTTTGGTGGCTTTGCGTTTGC
TCCAACGACCTACTTCTTGCCATGCATTATGTGGCTGTCGATCATGAAGCCAAAGAGGTTTGGCTTGTCCTGGTGCATCA
ACTGGTTCTGCATCATCATCGGCGTTCTTCTGTCGGTGTTCGCACCAATCGGAGGTCTCCGCTCGATCATCGTGAATGCC
CAGAGTTACAAGTTCTTCTCTTGAGTGATTAATTGAGAGAAAAGGTGTTTTACCGTTCAATTAAGTGTGTTCTTAATTAA
TTAGGGGATTGTTTTAGATAATGCACAGAGTTCTATTTAATTAATTAGATGAAAGAGAAATTCGTGTGTCCCTATGAGAC
ATCTGTGTGGATTGATATAGTAGTCGATCAAATGAAGGCATATTATTTATTTGGCCTTTGTTTGTCGATCTAGTACTCTA
GCGTTAATTTAATTCGTGTCGAGTTTATCCCAATTTTTGATGATGTTTGTGCTCTATTATCACGTGGTGTGGCATTCGTT
TTAAGGGTTTATGATTGGTTCAAACTTCGTCCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis