Browse Element(s) Details


Os.54920.1.S1_at

Description gb:AK107106.1
DB_XREF= gi:32992315
TID=Os.54920.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A11, full insert sequence.
FL= gb:AK107106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2659011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26550OsAffx.13060.1.S1_at11/113+15144223..15144943hypothetical protein
LOC_Os03g26560Os.24831.1.S1_x_at9/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_x_at6/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.4.S1_x_at2/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26560Os.24831.3.S1_s_at1/113+15147163..15150024retrotransposon protein, putative, unclassified
LOC_Os03g26570NANA3+15157634..15161856retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g26580OsAffx.30280.1.S1_x_at1/113+15162863..15164558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26590Os.54920.1.S1_at11/113+15167875..15174618expressed protein
LOC_Os03g26590Os.38751.1.A1_at3/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.30274.1.A1_x_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.28492.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.1198.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.19660.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26610Os.46055.2.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26610Os.10827.1.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54920.1.S1_at--845--1431Chr03:15174083..15174107 (25 bp)
AGAAGCCATTGACGTTGACGACGAG
LOC_Os03g26590
Os.54920.1.S1_at--1046--8171Chr03:15174290..15174314 (25 bp)
GGAAGCGAAACTCCGGTATCCCAAG
LOC_Os03g26590
Os.54920.1.S1_at--378--2672Chr03:15174312..15174336 (25 bp)
AAGCCGCTCGTTGCGCTGGACAATC
LOC_Os03g26590
Os.54920.1.S1_at--698--1591Chr03:15174346..15174370 (25 bp)
AGCTCCGTCGTCAGCGTGAGGTCAT
LOC_Os03g26590
Os.54920.1.S1_at--625--551Chr03:15174369..15174393 (25 bp)
ATCCGCCGGCTTGTAGCAGACGTAG
LOC_Os03g26590
Os.54920.1.S1_at--42--10071Chr03:15174391..15174415 (25 bp)
TAGTCCAGGAGGTAGCACCGCATGC
LOC_Os03g26590
Os.54920.1.S1_at--321--2311Chr03:15174493..15174517 (25 bp)
AAAGGCGTGAGCTCCATAGTGTTCG
LOC_Os03g26590
Os.54920.1.S1_at--341--3791Chr03:15174504..15174528 (25 bp)
CTCCATAGTGTTCGCATGCATGCAT
LOC_Os03g26590
Os.54920.1.S1_at--545--8911Chr03:15174528..15174552 (25 bp)
TGAGCTAGAGAGACCACAGGCTGGT
LOC_Os03g26590
Os.54920.1.S1_at--437--7051Chr03:15174551..15174575 (25 bp)
GTAATATATACCAGCGACCGTCGCA
LOC_Os03g26590
Os.54920.1.S1_at--850--4591Chr03:15174564..15174588 (25 bp)
GCGACCGTCGCAGCAACGAAATTAA
LOC_Os03g26590
Target Sequence 
AGAAGCCATTGACGTTGACGACGAGCACGTCGACGTCGCGGGCCCGGAGCCCCGTCCTGGCGAGGAGCTCCGGGACGGCG
CCGTCGAAGCAGGCGTCCATCTCGTCGACCGAATCCCTCTGGGCGGCGAGCTCCTCGCGGCCGTCGAGGAGGTTCCGCGG
CGCGTAGGTCCGGTCGCCGAGTCCCGTGCGGGAGATGAGGCGGACGAGGAAGCGAAACTCCGGTATCCCAAGCCGCTCGT
TGCGCTGGACAATCGCGCATGCCAGCTCCGTCGTCAGCGTGAGGTCATCCGCCGGCTTGTAGCAGACGTAGTCCAGGAGG
TAGCACCGCATGCCGCGGCGGCGGGAGGCGGCCGTCCATGCCATGTGCGCCACCGCGAGTGGCGGCGGGAGGAAGAGCAC
GACGGCGAGCAAAGGCGTGAGCTCCATAGTGTTCGCATGCATGCATGAGCTAGAGAGACCACAGGCTGGTAATATATACC
AGCGACCGTCGCAGCAACGAAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis