Browse Element(s) Details


Os.53235.1.S1_at

Description gb:AK071506.1
DB_XREF= gi:32981529
TID=Os.53235.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093M02, full insert sequence.
FL= gb:AK071506.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2662011/11Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26580OsAffx.30280.1.S1_x_at1/113+15162863..15164558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26590Os.54920.1.S1_at11/113+15167875..15174618expressed protein
LOC_Os03g26590Os.38751.1.A1_at3/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.30274.1.A1_x_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.28492.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.1198.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.19660.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26610Os.46055.2.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26610Os.10827.1.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53235.1.S1_at--290--5812Chr03:15188978..15189002 (25 bp)
GACGCGTACCCACCGGAGAGCAAGC
LOC_Os03g26620
Os.53235.1.S1_at--510--2672Chr03:15188999..15189023 (25 bp)
AAGCCCAGCCCGTTCTTGGAGAAGT
LOC_Os03g26620
Os.53235.1.S1_at--1151--7891Chr03:15189016..15189040 (25 bp)
GGAGAAGTTCGCTTGGGTCAACGAT
LOC_Os03g26620
Os.53235.1.S1_at--863--6311Chr03:15189038..15189062 (25 bp)
GATGAAGTCGCCGATGAATCCTCCT
LOC_Os03g26620
Os.53235.1.S1_at--845--9252Chr03:15189059..15189083 (25 bp)
TCCTCGCCGTTCTAGAGGACGGGAT
LOC_Os03g26620
Os.53235.1.S1_at--1046--951Chr03:15189074..15189098 (25 bp)
AGGACGGGATCACGCGACACGCATT
LOC_Os03g26620
Os.53235.1.S1_at--362--5631Chr03:15189089..15189113 (25 bp)
GACACGCATTGGCAGTAGGAGACTA
LOC_Os03g26620
Os.53235.1.S1_at--310--10091Chr03:15189112..15189136 (25 bp)
TAGGAGTAAATAAAGCGCAACCCGC
LOC_Os03g26620
Os.53235.1.S1_at--1080--5151Chr03:15189128..15189152 (25 bp)
GCAACCCGCCTCGAGTATAATTTTG
LOC_Os03g26620
Os.53235.1.S1_at--104--9791Chr03:15189181..15189205 (25 bp)
TAACGTGGATTTCTTGACGACAGAT
LOC_Os03g26620
Os.53235.1.S1_at--958--6932Chr03:15189264..15189288 (25 bp)
GTACAGAAGGAAGCTTACGCCGGAA
LOC_Os03g26620
Target Sequence 
GACGCGTACCCACCGGAGAGCAAGCCCAGCCCGTTCTTGGAGAAGTTCGCTTGGGTCAACGATGAAGTCGCCGATGAATC
CTCCTCGCCGTTCTAGAGGACGGGATCACGCGACACGCATTGGCAGTAGGAGACTAGGAGTAAATAAAGCGCAACCCGCC
TCGAGTATAATTTTGCTATAACAAATAGTATATTCCTAAAGAATAACGTGGATTTCTTGACGACAGATGTAGGTGTTATA
AAATCTATTTTAACGTGGATGATTTAAGATGTAAGTAAAAAGCTCAGTACAGAAGGAAGCTTACGCCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis