Browse Element(s) Details


OsAffx.25239.1.S1_at

Description tigr:9631.m02624
TID=OsAffx.25239.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26720OsAffx.25241.1.S1_at11/113+15230246..15230785hypothetical protein
LOC_Os03g26730NANA3+15233882..15234925hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25239.1.S1_at--836--4652Chr12:13452385..13452404 (20 bp)
GCGTGCCGACGTGCCATGGATGTAC
NONE
OsAffx.25239.1.S1_at--156--6271Chr03:15211172..15211196 (25 bp)
GATGTACTGGCCAGAGAGGACTGAA
LOC_Os03g26670
OsAffx.25239.1.S1_at--354--5371Chr03:15211217..15211241 (25 bp)
GAAGAAATGGCCGTACATGCTCCGT
LOC_Os03g26670
OsAffx.25239.1.S1_at--980--9871Chr03:15211230..15211254 (25 bp)
TACATGCTCCGTCTGTTGGCCGCGA
LOC_Os03g26670
OsAffx.25239.1.S1_at--142--6611Chr03:15211244..15211268 (25 bp)
GTTGGCCGCGACATGGCCGCACCAT
LOC_Os03g26670
OsAffx.25239.1.S1_at--368--3911Chr03:15211322..15211346 (25 bp)
CTGGAGGACGCATCGCCCAGCACGG
LOC_Os03g26670
OsAffx.25239.1.S1_at--400--1391Chr03:15211348..15211372 (25 bp)
AGACGTGCCGCCACAACACAGACGT
LOC_Os03g26670
OsAffx.25239.1.S1_at--28--2211Chr03:15211360..15211384 (25 bp)
ACAACACAGACGTCGTGCCGTTGCC
LOC_Os03g26670
OsAffx.25239.1.S1_at--170--7291Chr03:15211374..15211398 (25 bp)
GTGCCGTTGCCGCACCTACAGGCTG
LOC_Os03g26670
OsAffx.25239.1.S1_at--989--10051Chr03:15211449..15211473 (25 bp)
TAGTGGCCCGCCACATGGGTGCACC
LOC_Os03g26670
OsAffx.25239.1.S1_at--724--8411Chr03:15211518..15211542 (25 bp)
GGCCGACGACCACACATGGCAAGGC
LOC_Os03g26670
Target Sequence 
GCGTGCCGACGTGCCATGGATGTACTGGCCAGAGAGGACTGAAGATGAAGGAAAGAAGCAAAAGAAGAAATGGCCGTACA
TGCTCCGTCTGTTGGCCGCGACATGGCCGCACCATGACCGCGCACCCGACGGCCACACCGGCCGTGCCAACTGCAGTCGC
GCCCGCACCTGGAGGACGCATCGCCCAGCACGGCAGACGTGCCGCCACAACACAGACGTCGTGCCGTTGCCGCACCTACA
GGCTGCAGCCACTGCCCGGCCGATTGAGTTCCTCCTCCACTCCGCCACAGCCCGGTAGTGGCCCGCCACATGGGTGCACC
CCTCGGCTCGCCGCGCCAGTTGCGCCACCGCCAGGCGCGCTGCCGGCCGACGACCACACATGGCAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis