Browse Element(s) Details


OsAffx.20414.1.S1_at

Description gb:NM_196209.1
DB_XREF= gi:37533777
TID=OsAffx.20414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0019N10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g267041/11retrotransposon protein, putative, unclassified
LOC_Os04g187301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26720OsAffx.25241.1.S1_at11/113+15230246..15230785hypothetical protein
LOC_Os03g26730NANA3+15233882..15234925hypothetical protein
LOC_Os03g26750NANA3+15238581..15245144retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20414.1.S1_at--983--8471Chr10:12094219..12094670 (25 bp)
TGGCGATGTGCCAAGATTCCTCCAT
NONE
OsAffx.20414.1.S1_at--855--6912Chr10:12094708..12094732 (25 bp)
GTATGCTCCTCAATTCAATCAGTTC
NONE
OsAffx.20414.1.S1_at--334--5491Chr10:12094840..12094864 (25 bp)
GAACTTGTATATGCATCCGTATCCT
NONE
OsAffx.20414.1.S1_at--881--4972Chr10:12094852..12094876 (25 bp)
GCATCCGTATCCTGAGTGGTTCGAA
NONE
OsAffx.20414.1.S1_at--534--6711Chr10:12094870..12094894 (25 bp)
GTTCGAAAGAGTTGCATTTCCTGCT
NONE
OsAffx.20414.1.S1_at--77--211Chr10:12094885..12094909 (25 bp)
ATTTCCTGCTAGGTACAAGGTGCCA
NONE
OsAffx.20414.1.S1_at--211--7611Chr10:12094928..12094952 (25 bp)
GGGCAAGATAATGTTTCCACTTATG
NONE
OsAffx.20414.1.S1_at--76--2031Chr10:12094946..12094970 (25 bp)
ACTTATGAACATGTCACCCGATTCT
NONE
OsAffx.20414.1.S1_at--1091--391Chr10:12094990..12095014 (25 bp)
ATCAGCTGTTGATGCCTTGAGAGTT
NONE
OsAffx.20414.1.S1_at--162--6012Chr10:12095008..12095032 (25 bp)
GAGAGTTAGGTTATTTCCTTTGTCT
NONE
OsAffx.20414.1.S1_at--885--4292Chr10:12095024..12095048 (25 bp)
CCTTTGTCTTTATTCGGATCGGCTT
NONE
Target Sequence 
TGGCGATGTGCCAAGATTCCTCCATCACCTCATGTCCACCAAGGGGGGTCAACTCAGCCTCAGTATGCTCCTCAATTCAA
TCAGTTCGAGCCGATACAGCAGCATACACAAGGGGTACCTCAGCAGAGACCTTGGGCCGATATGATTGCAGATGTGATGA
GGGAACAGTTCGGGCTCAAGCCAAAGGACACTGGGAACTTGTATATGCATCCGTATCCTGAGTGGTTCGAAAGAGTTGCA
TTTCCTGCTAGGTACAAGGTGCCAGATTTCTCAAAATTTTCAGGGCAAGATAATGTTTCCACTTATGAACATGTCACCCG
ATTCTTAGCTCAATGTGGAGAAGCATCAGCTGTTGATGCCTTGAGAGTTAGGTTATTTCCTTTGTCTTTATTCGGATCGG
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis