Browse Element(s) Details

Description

gb:CF337312
DB_XREF= gi:33823016
DB_XREF=JMT--07-L07.b1
CLONE=JMT--07-L07
TID=Os.40390.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40390 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g26460	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g26420	OsAffx.13053.1.S1_at	11/11	3	+	15075879..15076541	Zinc finger, C3HC4 type family protein
LOC_Os03g26430	Os.11373.1.S1_at	11/11	3	+	15079319..15081192	Aldose 1-epimerase family protein, expressed
LOC_Os03g26440	OsAffx.13054.1.S1_at	11/11	3	+	15085399..15092373	tRNA pseudouridine synthase A family protein
LOC_Os03g26450	Os.15764.1.S1_at	11/11	3	+	15093858..15097099	F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460	Os.6724.1.S1_at	11/11	3	+	15097190..15100288	expressed protein
LOC_Os03g26460	Os.40390.1.A1_x_at	1/11	3	+	15097190..15100288	expressed protein
LOC_Os03g26470	OsAffx.13055.1.S1_at	11/11	3	+	15100623..15101070	hypothetical protein
LOC_Os03g26480	OsAffx.13056.1.S1_at	11/11	3	+	15103183..15105820	hypothetical protein
LOC_Os03g26490	Os.55461.1.S1_at	11/11	3	+	15106015..15107011	expressed protein
LOC_Os03g26500	OsAffx.3335.1.S1_at	11/11	3	+	15110150..15111064	expressed protein
LOC_Os03g26510	OsAffx.13057.1.S1_at	11/11	3	+	15117442..15117708	hypothetical protein

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.40390.1.A1_x_at--592--877	1	NONE	TGTTGGTAAAGCGAACCCGTGAAAT	NONE
Os.40390.1.A1_x_at--734--847	1	NONE	TGGTAAAGCGAACCCGTGAAATCCT	NONE
Os.40390.1.A1_x_at--238--983	1	NONE	TAAAGCGAACCCGTGAAATCCTTGA	NONE
Os.40390.1.A1_x_at--541--233	1	NONE	AAAGCGAACCCGTGAAATCCTTGAG	NONE
Os.40390.1.A1_x_at--638--265	1	NONE	AAGCGAACCCGTGAAATCCTTGAGA	NONE
Os.40390.1.A1_x_at--1125--163	1	NONE	AGCGAACCCGTGAAATCCTTGAGAG	NONE
Os.40390.1.A1_x_at--761--459	1	NONE	GCGAACCCGTGAAATCCTTGAGAGT	NONE
Os.40390.1.A1_x_at--1153--409	1	NONE	CGAACCCGTGAAATCCTTGAGAGTT	NONE
Os.40390.1.A1_x_at--282--543	1	NONE	GAACCCGTGAAATCCTTGAGAGTTT	NONE
Os.40390.1.A1_x_at--985--423	1	NONE	CCGTGAAATCCTTGAGAGTTTTAGA	NONE
Os.40390.1.A1_x_at--423--567	1	Chr03:15097494..15097517 (24 bp)	GACTTGTTTGTGACGCTGCCAGGTT	LOC_Os03g26460

Target Sequence

TGTTGGTAAAGCGAACCCGTGAAATCCTTGAGAGTTTTAGAACGTTATGCTTGACTTGTTTGTGACGCTGCCAGGTT

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: