Browse Element(s) Details


Os.6724.1.S1_at

Description gb:AK068105.1
DB_XREF= gi:32978123
TID=Os.6724.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131N05, full insert sequence.
FL= gb:AK068105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2646011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6724.1.S1_at--293--2651Chr03:15099083..15099107 (25 bp)
AAGCCACCTGTGTTCCTCAAGGTTG
LOC_Os03g26460
Os.6724.1.S1_at--822--2071Chr03:15098933..15099049 (25 bp)
ACATTGGGCTTGGTGACTTCGGTGA
LOC_Os03g26460
Os.6724.1.S1_at--564--6491Chr03:15098832..15098934 (25 bp)
GATATGGACTTCTCGAAGCTGGGCA
LOC_Os03g26460
Os.6724.1.S1_at--978--6311Chr03:15098769..15098793 (25 bp)
GATGACACGGCTGACAGTGCTAACA
LOC_Os03g26460
Os.6724.1.S1_at--1028--2171Chr03:15097362..15097386 (25 bp)
ACACTGTTCTGTTATGTGAATCGCC
LOC_Os03g26460
Os.6724.1.S1_at--20--5271Chr03:15097345..15097369 (25 bp)
GAATCGCCATATTTGCATCAACCAT
LOC_Os03g26460
Os.6724.1.S1_at--943--4351Chr03:15097309..15097333 (25 bp)
CCAGCCATTCTGTGTTTCATACTTT
LOC_Os03g26460
Os.6724.1.S1_at--387--6831Chr03:15097296..15097320 (25 bp)
GTTTCATACTTTTACTCATAGCGGT
LOC_Os03g26460
Os.6724.1.S1_at--767--3571Chr03:15097280..15097304 (25 bp)
CATAGCGGTTTGGTGGCATGTTCCA
LOC_Os03g26460
Os.6724.1.S1_at--284--3511Chr03:15097264..15097288 (25 bp)
CATGTTCCATTTGCCTTGTACTTTG
LOC_Os03g26460
Os.6724.1.S1_at--1015--5331Chr03:15097202..15097226 (25 bp)
GAAGTATCCAGCTTGCTCAATCCAT
LOC_Os03g26460
Target Sequence 
AAGCCACCTGTGTTCCTCAAGGTTGATTGGGATAAGTGGCAAGATGAGGATGATGAAGACATTGGGCTTGGTGACTTCGG
TGATATGGACTTCTCGAAGCTGGGCATGGGAGGTCCTGATGATGATCTTGAGGACGATGACGAAGATGACACGGCTGACA
GTGCTAACAAAGATGATGAAGACATTAAGGCAGAGGGGAGCGGGGAACAGGAAGCTGCTGGTGAAGCGAAGCCNGTGAAA
TACCTGAGAGTTTTAGAACGCTATGCTTGACTTGTTTGTGACGCTGCCAGGTCTTAAGATTTTTTTGGTGTAAACTCTGG
AGAGTGGATCACTGCCACTAAAGTAAAGTAGTANTTATGGTTTAGTAGCTCCATTTTGTTAAAAAACTTTGTGCATTGCA
CACTGTTCTGTTATGTGAATCGCCATATTTGCATCAACCATTGCAAAGCTATCCAGCCATTCTGTGTTTCATACTTTTAC
TCATAGCGGTTTGGTGGCATGTTCCATTTGCCTTGTACTTTGGAACTTGCATAATTGTTCGTGACTGTAAAAATAAACTG
AAGTATCCAGCTTGCTCAATCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis