Browse Element(s) Details


Os.15789.1.S1_x_at

Description gb:AK061040.1
DB_XREF= gi:32971058
TID=Os.15789.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-D01, full insert sequence.
FL= gb:AK061040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0892011/11Peroxidase 43 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08900OsAffx.31655.1.S1_at11/1112+4641198..4645998aminotransferase, putative
LOC_Os12g08909NANA12+4647826..4648633NA
LOC_Os12g08920Os.15789.1.S1_x_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920Os.15789.1.S1_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920OsAffx.18781.1.S1_x_at1/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08930OsAffx.7530.1.S1_s_at11/1112+4655467..4656003expressed protein
LOC_Os12g08940NANA12+4666699..4668135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g08950OsAffx.19560.1.S1_x_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08950OsAffx.19560.1.S1_at11/1112+4669957..4670280hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15789.1.S1_x_at--900--3991Chr12:4652844..4652868 (25 bp)
CGTGCTTCCGGACGTCGTCGATTCC
LOC_Os12g08920
Os.15789.1.S1_x_at--141--1911Chr12:4652833..4652857 (25 bp)
ACGTCGTCGATTCCATCCAGGTGCT
LOC_Os12g08920
Os.15789.1.S1_x_at--1006--2151Chr12:4652669..4652692 (24 bp)
ACAGCGGCGCACACGATCGGCACGA
LOC_Os12g08920
Os.15789.1.S1_x_at--534--5091Chr12:4652650..4652674 (25 bp)
GCACGACGGCGTGCTTCTTCGTGAA
LOC_Os12g08920
Os.15789.1.S1_x_at--817--8251Chr12:4652492..4652516 (25 bp)
GGCAGCGAGCGCGACTTCGACGACT
LOC_Os12g08920
Os.15789.1.S1_x_at--145--1631Chr12:4652347..4652371 (25 bp)
AGCGGGACTTCGTCGCCGCCATGGT
LOC_Os12g08920
Os.15789.1.S1_x_at--890--1011Chr12:4652281..4652305 (25 bp)
AGGTCAGGGACGTGTGCTCCCAGTT
LOC_Os12g08920
Os.15789.1.S1_x_at--557--9091Chr12:4652267..4652291 (25 bp)
TGCTCCCAGTTCAACACCGACTGAT
LOC_Os12g08920
Os.15789.1.S1_x_at--586--3251Chr12:4652256..4652280 (25 bp)
CAACACCGACTGATTGATCGATCGA
LOC_Os12g08920
Os.15789.1.S1_x_at--407--6371Chr12:4652229..4652253 (25 bp)
GATCCATCGGTCGAACACTGTACAT
LOC_Os12g08920
Os.15789.1.S1_x_at--1142--5491Chr12:4652217..4652241 (25 bp)
GAACACTGTACATTTCTTCTGAAAG
LOC_Os12g08920
Target Sequence 
CGTGCTTCCGGACGTCGTCGATTCCATCCAGGTGCTCCGCTCCAGGTTCGCCGCCAGCGGCCTCGACGACCGCGACCTCG
TCCTCCTCACAGCGGCGCACACGATCGGCACGACGGCGTGCTTCTTCGTGAAGGACAGGCTGTACAACTACCGCCTCCGC
GGCGGCGGCGTCGGGTCGGACCCGTCCATCCCGGCGGCGTTCCTGGCGGAGCTCAAGGCGCGGTGCGCGCCGGGCGACTT
CAACACGCGCGTCGCGCTGGACCGCGGCAGCGAGCGCGACTTCGACGACTCCATCCTCCGCAACATCCGCTCCGGCCTCG
CCGTCATCGCCTCTGACGCCGCGCTCGACGCCAGCAACGCCACGCGCGGCCTCGTCACGGCCTACCTCGGCGCCGCGTCG
CGCAGGTTCGAGCGGGACTTCGTCGCCGCCATGGTGAAGATGGGCACCATCGGCGCGCTCACCGGCGACGACGGCGAGGT
CAGGGACGTGTGCTCCCAGTTCAACACCGACTGATTGATCGATCGATCGATCCATCGGTCGAACACTGTACATTTCTTCT
GAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15789.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis