Browse Element(s) Details


OsAffx.31655.1.S1_at

Description tigr:9640.m00828
TID=OsAffx.31655.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0890011/11aminotransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08890NANA12+4615221..4616294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08900OsAffx.31655.1.S1_at11/1112+4641198..4645998aminotransferase, putative
LOC_Os12g08909NANA12+4647826..4648633NA
LOC_Os12g08920Os.15789.1.S1_x_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920Os.15789.1.S1_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920OsAffx.18781.1.S1_x_at1/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08930OsAffx.7530.1.S1_s_at11/1112+4655467..4656003expressed protein
LOC_Os12g08940NANA12+4666699..4668135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g08950OsAffx.19560.1.S1_x_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08950OsAffx.19560.1.S1_at11/1112+4669957..4670280hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31655.1.S1_at--421--3091Chr12:4643219..4643243 (25 bp)
AATAACGAGCTTTCTCTTCGCATAC
LOC_Os12g08900
OsAffx.31655.1.S1_at--907--4951Chr12:4643238..4643261 (24 bp)
GCATACGCTCTGCACTTGTTGAGGG
LOC_Os12g08900
OsAffx.31655.1.S1_at--1151--7851Chr12:4643358..4643382 (25 bp)
GGTATCTTGGACTTAAGCCCGGGTG
LOC_Os12g08900
OsAffx.31655.1.S1_at--301--5851Chr12:4643383..4643407 (25 bp)
GACCAGGTTGAGTTTTGCTTACTAC
LOC_Os12g08900
OsAffx.31655.1.S1_at--98--5071Chr12:4643456..4643480 (25 bp)
GCAGCATATGGTCATCGATTCCTCT
LOC_Os12g08900
OsAffx.31655.1.S1_at--716--3211Chr12:4643536..4643560 (25 bp)
CAAGGAGTTATCTGCTGCCACTGGT
LOC_Os12g08900
OsAffx.31655.1.S1_at--787--3811Chr12:4643550..4643574 (25 bp)
CTGCCACTGGTGTGCTTTTAGGTGA
LOC_Os12g08900
OsAffx.31655.1.S1_at--981--9491Chr12:4643676..4643700 (25 bp)
TCTCCTTGCCGGATATCAATCAACA
LOC_Os12g08900
OsAffx.31655.1.S1_at--841--11Chr12:4645341..4645365 (25 bp)
ATTGGAAATGGCCTAATCCCACCAC
LOC_Os12g08900
OsAffx.31655.1.S1_at--216--551Chr12:4645356..4645380 (25 bp)
ATCCCACCACGAATCATTGCATTGA
LOC_Os12g08900
OsAffx.31655.1.S1_at--703--7191Chr12:4645903..4645924 (22 bp)
GTCGGATATTTTGTACTGTCACGTG
LOC_Os12g08900
Target Sequence 
AATAACGAGCTTTCTCTTCGCATACGCTCTGCACTTGTTGAGGGGTATCTTGGACTTAAGCCCGGGTGGACCAGGTTGAG
TTTTGCTTACTACATCTCCAAAGAGGAATTCAAATTCATCCTAGATGCCATTGAGTTTTTAGCAGCATATGGTCATCGAT
TCCTCTCGTTGTACAAGTTCGATTGGAGGAGCAGTAACTGGACGTTCAGTAAACAGGCAGCCAAGGAGTTATCTGCTGCC
ACTGGTGTGCTTTTAGGTGAAGATCTCCAGTTCAAGGCTGAAGATAAATCAGATAATAATAAACCCGAGCCAAATCATAC
AAAATTTGCAACATATATGGAGAATGCCAAGAGAATTGCACTCTCCTTGCCGGATATCAATCAACAAATTATTAGTATTC
CCCAAGGAGTAGACCCTGATATTATTATTTTTCATATGATTGGAAATGGCCTAATCCCACCACGAATCATTGCATTGATT
GAAGCTGTCGGATATTTTGTACTGTCACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis