Browse Element(s) Details


OsAffx.7530.1.S1_s_at

Description tigr:9640.m00831
TID=OsAffx.7530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08900OsAffx.31655.1.S1_at11/1112+4641198..4645998aminotransferase, putative
LOC_Os12g08909NANA12+4647826..4648633NA
LOC_Os12g08920Os.15789.1.S1_x_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920Os.15789.1.S1_at11/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08920OsAffx.18781.1.S1_x_at1/1112+4652181..4653601Peroxidase 43 precursor, putative, expressed
LOC_Os12g08930OsAffx.7530.1.S1_s_at11/1112+4655467..4656003expressed protein
LOC_Os12g08940NANA12+4666699..4668135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g08950OsAffx.19560.1.S1_x_at11/1112+4669957..4670280hypothetical protein
LOC_Os12g08950OsAffx.19560.1.S1_at11/1112+4669957..4670280hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7530.1.S1_s_at--832--2791Chr12:4655949..4655973 (25 bp)
AAGATGGTTCTTGGCCTGGACTGCT
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--470--3911Chr12:4655934..4655958 (25 bp)
CTGGACTGCTTTGGTGTTCTTGAGA
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--663--7271Chr12:4655751..4655775 (25 bp)
GTGCCTCACTTTCCTTGCCGTTCTA
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--835--871Chr12:4655723..4655747 (25 bp)
ATGGCCTGCTCTAGTTTCAGTATCA
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--505--3711Chr12:4655713..4655737 (25 bp)
CTAGTTTCAGTATCATTTTGTTCTT
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--55--5971Chr12:4655655..4655679 (25 bp)
GAGAATGCTTGGCTGATGAACACTG
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--959--3332Chr12:4655635..4655659 (25 bp)
CACTGTGTTAGAGGCTTTGTTATAA
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--683--6611Chr12:4655604..4655628 (25 bp)
GTTGGCATAGCGGAACAGCGACCTA
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--285--3391Chr12:4655589..4655613 (25 bp)
CAGCGACCTATGAAAGATTGTTCTT
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--1061--10431Chr12:4655557..4655581 (25 bp)
TTAATTGGGCATATTCTAGGACAGA
LOC_Os12g08930
OsAffx.7530.1.S1_s_at--224--7851Chr12:4655502..4655526 (25 bp)
GGTACTATCATGTTGTTTTCCTCTA
LOC_Os12g08930
Target Sequence 
AAGATGGTTCTTGGCCTGGACTGCTTTGGTGTTCTTGAGAGGAAGAGGTCAAAGCCATCACCAAAGCAGCAGGAAGCTGA
AGATGCAAAGATGCAGAAGGGAGCAGTAGAAGTAGGAGGATCATCAAAGGCTGGGGAGAAGATGGAAGAGAAGGAGAAGA
GCAAGAAGGGGAAGGAGTGCAGAGGGGCTCCTCTTCTGGTGCCTCACTTTCCTTGCCGTTCTACCCATGGCCTGCTCTAG
TTTCAGTATCATTTTGTTCTTTCTTTCTTTCTTCCCTTGGCCTTTTTCTTGGAGGAGAATGCTTGGCTGATGAACACTGT
GTTAGAGGCTTTGTTATAAAAGTTAGTTGGCATAGCGGAACAGCGACCTATGAAAGATTGTTCTTTCATAAATTAATTGG
GCATATTCTAGGACAGAAGAAATTGGCATATTGAATCTGTATATTTTGGTACTATCATGTTGTTTTCCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7530.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis