Browse Element(s) Details


Os.15871.1.A1_at

Description gb:CB967452
DB_XREF= gi:30229561
DB_XREF=NL53_C05
CLONE=NL53_C05
TID=Os.15871.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.15871 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_073147.1 (M.musculus) nischarin; imidazoline receptor I-1-like protein (Mus musculus)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g393302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15871.1.A1_at--287--2411NONE
AAACACAGCCATAGTCAATTTAGCA
NONE
Os.15871.1.A1_at--946--2391Chr08:24721928..24721952 (25 bp)
AAACATATACTACTACACAATTCAT
LOC_Os08g39330
Os.15871.1.A1_at--1146--2011Chr03:35627903..35627922 (20 bp)
ACTACACAATTCATATTTGGCCATA
NONE
Os.15871.1.A1_at--1116--372Chr08:24721967..24721991 (25 bp)
ATCACAACACACATGTATCTTGGAG
LOC_Os08g39330
Os.15871.1.A1_at--583--2111NONE
ACATGTATCTTGGAGTTTGTACTAC
NONE
Os.15871.1.A1_at--56--9851NONE
TAAATTTATAGTCCATTGATCTTCT
NONE
Os.15871.1.A1_at--980--1131NONE
AGTCCATTGATCTTCTATCTTCTCT
NONE
Os.15871.1.A1_at--1123--6792Chr02:28317588..28317625 (25 bp)
GTTTATACCTGGCTTATACCTGCTC
NONE
Os.15871.1.A1_at--981--1751NONE
ACCTGGCTTATACCTGCTCAAATGT
NONE
Os.15871.1.A1_at--1015--8291NONE
GGCTTATACCTGCTCAAATGTTGCA
NONE
Os.15871.1.A1_at--517--3291NONE
CAAATGTTGCAGGTCCAAGCAGTCG
NONE
Target Sequence 
AAACACAGCCATAGTCAATTTAGCAACCAATTCATACAATAGTTACCTATAAACATATACTACTACACAATTCATATTTG
GCCATACATATCACAACACACATGTATCTTGGAGTTTGTACTACAGCTGGCTATAAATTTATAGTCCATTGATCTTCTAT
CTTCTCTTTTATCTTCTCGAAATATGTTTATACCTGGCTTATACCTGCTCAAATGTTGCAGGTCCAAGCAGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15871.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis