Browse Element(s) Details


Os.15971.1.S1_at

Description gb:AK102436.1
DB_XREF= gi:32987645
TID=Os.15971.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093J18, full insert sequence.
FL= gb:AK102436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4181011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41780Os.47903.1.A1_at11/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41780OsAffx.11966.1.S1_x_at1/116+25049896..25053509guanine nucleotide exchange family protein, putative, expressed
LOC_Os06g41790Os.7462.1.S1_at11/116+25053772..25057838RNA recognition motif family protein, expressed
LOC_Os06g41800Os.55092.1.S1_at11/116+25065393..25070031Dihydroflavonol-4-reductase, putative, expressed
LOC_Os06g41810Os.15971.1.S1_at11/116+25072609..25075490NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41820OsAffx.28052.1.S1_at11/116+25079896..25080933Strictosidine synthase family protein
LOC_Os06g41830OsAffx.28052.1.S1_at11/116+25084540..25085529Strictosidine synthase family protein
LOC_Os06g41840Os.6207.1.S1_s_at11/116+25086047..25089148NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g41850OsAffx.28052.1.S1_at11/116+25092245..25093297Strictosidine synthase family protein
LOC_Os06g41860NANA6+25097380..25098156hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15971.1.S1_at--1141--8091Chr06:25073751..25073775 (25 bp)
GGACCCTTAATGCAATCTACAGTAA
LOC_Os06g41810
Os.15971.1.S1_at--249--6291Chr06:25073398..25073422 (25 bp)
GATGTTCGTGATGTTGCCAATGCTC
LOC_Os06g41810
Os.15971.1.S1_at--895--3011Chr06:25073380..25073404 (25 bp)
AATGCTCTCCTTTTGGCGTATGAAA
LOC_Os06g41810
Os.15971.1.S1_at--754--5511Chr06:25073359..25073383 (25 bp)
GAAAATCCAGCATCCGGACGATACA
LOC_Os06g41810
Os.15971.1.S1_at--1116--9871Chr06:25073338..25073362 (25 bp)
TACATCTGCAGCTCAGCTCCAATAA
LOC_Os06g41810
Os.15971.1.S1_at--74--5551Chr06:25072839..25072863 (25 bp)
GAAACTTCAGAAGCTTGGCTGGAGT
LOC_Os06g41810
Os.15971.1.S1_at--886--4711Chr06:25072822..25072846 (25 bp)
GCTGGAGTTTCAGGCCTATTGAGGA
LOC_Os06g41810
Os.15971.1.S1_at--256--5551Chr06:25072799..25072823 (25 bp)
GAAACCCTCCGGGACAGCGTGGAAT
LOC_Os06g41810
Os.15971.1.S1_at--221--4671Chr06:25072783..25072807 (25 bp)
GCGTGGAATCCTACAAAGCATTTGG
LOC_Os06g41810
Os.15971.1.S1_at--1001--3451Chr06:25072724..25072748 (25 bp)
CAGTGTCTGTTAAACTCTCCATGAT
LOC_Os06g41810
Os.15971.1.S1_at--534--7411Chr06:25072688..25072712 (25 bp)
GTGTTGAGATCAACCGGGTCAATAA
LOC_Os06g41810
Target Sequence 
GGACCCTTAATGCAATCTACAGTAAACGCGAGTAGTAAAGTTCTCATTAACTATTTCAAAGGAGATCGTGACACTGTCGA
AAATAGACTCCGGAATGTAGTGGATGTTCGTGATGTTGCCAATGCTCTCCTTTTGGCGTATGAAAATCCAGCATCCGGAC
GATACATCTGCAGCTCAGCTCCAATAAGAGTCTCTGATATGATAAACATTTTAAAGACCTTATATCCAACTTANACTTAT
CCCAAAAACTTTGTGGATGTGGAAGAGAACACCATATACAGTNTTGAGAAACTTCAGAAGCTTGGCTGGAGTTTCAGGCC
TATTGAGGAAACCCTCCGGGACAGCGTGGAATCCTACAAAGCATTTGGCATCCTTGATTGAGGATCCAAACTGTGAGAAC
TTCAGTGTCTGTTAAACTCTCCATGATTCATGTAATCTGTGTTGAGATCAACCGGGTCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis