Browse Element(s) Details


Os.15982.1.S1_s_at

Description gb:BI800939
DB_XREF= gi:16573643
DB_XREF=H032G10
CLONE=H032G10
TID=Os.15982.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15982 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3015011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30110Os.23296.1.S1_x_at10/112+17875019..17880557Cytochrome P450 family protein, expressed
LOC_Os02g30120Os.28943.1.S1_x_at1/112+17887328..17890541retrotransposon protein, putative, unclassified
LOC_Os02g30130NANA2+17891166..17897367retrotransposon protein, putative, unclassified
LOC_Os02g30140Os.16171.1.A1_at11/112+17899269..17903289expressed protein
LOC_Os02g30150OsAffx.2801.1.S1_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30150Os.15982.1.S1_s_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30160OsAffx.25952.1.S1_s_at2/112+17912237..17919538retrotransposon protein, putative, unclassified
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15982.1.S1_s_at--437--6591Chr02:17908598..17908622 (25 bp)
GATTGCACATATCAGTGATGCCGAC
LOC_Os02g30150
Os.15982.1.S1_s_at--1047--3331Chr02:17908729..17908753 (25 bp)
CAGCTTACCTTTGTGATTGTTACTA
LOC_Os02g30150
Os.15982.1.S1_s_at--826--2631Chr02:17909315..17909339 (25 bp)
AACCACAGCTTGAGTTCAGTTGCCT
LOC_Os02g30150
Os.15982.1.S1_s_at--448--9651Chr02:17909330..17909354 (25 bp)
TCAGTTGCCTGGTGACAGTAACACG
LOC_Os02g30150
Os.15982.1.S1_s_at--1088--9751Chr02:17909372..17909396 (25 bp)
TAATCTTCATAATCCACTGTGTACT
LOC_Os02g30150
Os.15982.1.S1_s_at--220--7431Chr02:17909390..17909414 (25 bp)
GTGTACTTCATTTCACGGACTGTAA
LOC_Os02g30150
Os.15982.1.S1_s_at--447--8251Chr02:17909444..17909468 (25 bp)
GGCACTCTGCCATGGTTTTGGTATA
LOC_Os02g30150
Os.15982.1.S1_s_at--997--1731Chr02:17909487..17909511 (25 bp)
ACCATTCTGCTCAATATTTCTACCC
LOC_Os02g30150
Os.15982.1.S1_s_at--388--191Chr02:17909502..17909526 (25 bp)
ATTTCTACCCTTGCATTCATCGTAT
LOC_Os02g30150
Os.15982.1.S1_s_at--479--6851Chr02:17909538..17909562 (25 bp)
GTTTGCATGAGTTTACCTTGTGGTT
LOC_Os02g30150
Os.15982.1.S1_s_at--815--9971Chr02:17909551..17909575 (25 bp)
TACCTTGTGGTTTGACACATTCCTG
LOC_Os02g30150
Target Sequence 
GATTGCACATATCAGTGATGCCGACATTCGGTGAGATATGATACATGACATGGAATGGGATTTGGTACACAGAGCATATG
TGAACAATGCATGGAGTTTTCTCAAACTTTTCAAGTTCTCTGTCATCATTACAGCTTACCTTTGTGATTGTTACTAACAT
TTTGTTAGCCTAAATTGCTAGGAATTCCATTGGAACCACAGCTTGAGTTCAGTTGCCTGGTGACAGTAACACGGAGAAGC
TATTAATTCTTAATCTTCATAATCCACTGTGTACTTCATTTCACGGACTGTAATGTCAATTTCATAAACCAGCAGTTAAT
TTGGCACTCTGCCATGGTTTTGGTATAGTTCACTCTATGATAAATACCATTCTGCTCAATATTTCTACCCTTGCATTCAT
CGTATTCACATTTTTTGTTTGCATGAGTTTACCTTGTGGTTTGACACATTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15982.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis