Browse Element(s) Details


Os.23296.1.S1_x_at

Description gb:AK120677.1
DB_XREF= gi:37990300
TID=Os.23296.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23296 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162E22, full insert sequence.
FL= gb:AK120677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3011010/11Cytochrome P450 family protein, expressed
LOC_Os02g301001/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30070OsAffx.24507.1.S1_at11/112+17853780..17854251expressed protein
LOC_Os02g30080OsAffx.24508.1.S1_at11/112+17856325..17861119Cytochrome P450 family protein, expressed
LOC_Os02g30090OsAffx.24508.2.S1_at10/112+17862035..17865321Cytochrome P450 family protein
LOC_Os02g30100Os.13604.1.S1_at11/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30100Os.23296.1.S1_x_at1/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30110Os.23296.1.S1_x_at10/112+17875019..17880557Cytochrome P450 family protein, expressed
LOC_Os02g30120Os.28943.1.S1_x_at1/112+17887328..17890541retrotransposon protein, putative, unclassified
LOC_Os02g30130NANA2+17891166..17897367retrotransposon protein, putative, unclassified
LOC_Os02g30140Os.16171.1.A1_at11/112+17899269..17903289expressed protein
LOC_Os02g30150OsAffx.2801.1.S1_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30150Os.15982.1.S1_s_at11/112+17904762..17909604NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23296.1.S1_x_at--13--7211NONE
GTCGTCGTCCTCGAGGTTTGCGGAT
NONE
Os.23296.1.S1_x_at--401--4112Chr02:17880096..17880120 (25 bp)
CGAAGATGGTGATCCCGTTTGGTAT
LOC_Os02g30110
Os.23296.1.S1_x_at--1148--9431Chr02:17880165..17880189 (25 bp)
TCGGACTTACACTAGGGACGCTGAT
LOC_Os02g30110
Os.23296.1.S1_x_at--750--1071Chr02:17880178..17880202 (25 bp)
AGGGACGCTGATCCAGTGCTTTGAT
LOC_Os02g30110
Os.23296.1.S1_x_at--93--6111Chr02:17880239..17880263 (25 bp)
GAGTCCTCTGGGATTACAATGCCAA
LOC_Os02g30110
Os.23296.1.S1_x_at--196--6211Chr02:17880278..17880302 (25 bp)
GAGGCATTCTATCAACCTAGAGCAT
LOC_Os02g30110
Os.23296.1.S1_x_at--484--5931Chr02:17880297..17880321 (25 bp)
GAGCATGCATGGTTCATCTTCTTTC
LOC_Os02g30110
Os.23296.1.S1_x_at--13--6751Chr02:17880308..17880332 (25 bp)
GTTCATCTTCTTTCGTCCTAATATT
LOC_Os02g30110
Os.23296.1.S1_x_at--378--10011Chr02:17880392..17880416 (25 bp)
TAGCTCAATTTGGTGTGATTTGCCC
LOC_Os02g30110
Os.23296.1.S1_x_at--272--10711Chr02:17880411..17880435 (25 bp)
TTGCCCATAGTAATTGGTGCCTCTG
LOC_Os02g30110
Os.23296.1.S1_x_at--261--7791Chr02:17880426..17880450 (25 bp)
GGTGCCTCTGTTACTCTATATATGT
LOC_Os02g30110
Target Sequence 
GTCGTCGTCCTCGAGGTTTGCGGATGGACAAAACGAAGCGAAGATGGTGATCCCGTTTGGTATGGGGAGAAGGGGGTGCC
CGGGAGAGAATTTGGCGATGCAAATGGTCGGACTTACACTAGGGACGCTGATCCAGTGCTTTGATTGGGAAAGGGTGGGG
GAAGAGCTCGNGGACATGGGTGAGTCCTCTGGGATTACAATGCCAAAGAAGTTGCCTCTTGAGGCATTCTATCAACCTAG
AGCATGCATGGTTCATCTTCTTTCGTCCTAATATTTAATCAGCAGTTTTCCAAACATAATTGGTTGTTGAACTCTGTAAT
CGAAAGAAATGATGTAGCTCAATTTGGTGTGATTTGCCCATAGTAATTGGTGCCTCTGTTACTCTATATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23296.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis