Browse Element(s) Details


Os.13604.1.S1_at

Description gb:AK100163.1
DB_XREF= gi:32985372
TID=Os.13604.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021D15, full insert sequence.
FL= gb:AK100163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3010011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30060OsAffx.24506.1.S1_at11/112+17842472..178466783-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os02g30070OsAffx.24507.1.S1_at11/112+17853780..17854251expressed protein
LOC_Os02g30080OsAffx.24508.1.S1_at11/112+17856325..17861119Cytochrome P450 family protein, expressed
LOC_Os02g30090OsAffx.24508.2.S1_at10/112+17862035..17865321Cytochrome P450 family protein
LOC_Os02g30100Os.13604.1.S1_at11/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30100Os.23296.1.S1_x_at1/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30110Os.23296.1.S1_x_at10/112+17875019..17880557Cytochrome P450 family protein, expressed
LOC_Os02g30120Os.28943.1.S1_x_at1/112+17887328..17890541retrotransposon protein, putative, unclassified
LOC_Os02g30130NANA2+17891166..17897367retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13604.1.S1_at--1014--5491Chr02:17869268..17869292 (25 bp)
GAACACGTTCGCCATTCACAGGGAT
LOC_Os02g30100
Os.13604.1.S1_at--639--3591Chr02:17869280..17869304 (25 bp)
CATTCACAGGGATCCCCAGGTTTGG
LOC_Os02g30100
Os.13604.1.S1_at--713--8971Chr02:17869307..17869331 (25 bp)
TGAACCAGAAGCCTTCATCCCAGAT
LOC_Os02g30100
Os.13604.1.S1_at--1032--4431Chr02:17869317..17869669 (25 bp)
GCCTTCATCCCAGATAGGTTTGCGG
LOC_Os02g30100
Os.13604.1.S1_at--348--9171Chr02:17869761..17869785 (25 bp)
TGCCCTTGGGACATTGATCCAGTGT
LOC_Os02g30100
Os.13604.1.S1_at--163--5671Chr02:17869819..17869843 (25 bp)
GACATGAGGGAGTGCTCTGGCCTTA
LOC_Os02g30100
Os.13604.1.S1_at--804--7311Chr02:17869830..17869854 (25 bp)
GTGCTCTGGCCTTACAATGCCAAAG
LOC_Os02g30100
Os.13604.1.S1_at--548--4391Chr02:17869848..17869872 (25 bp)
GCCAAAGGAGTTGCCTCTCGAGGCC
LOC_Os02g30100
Os.13604.1.S1_at--948--1731Chr02:17869881..17869905 (25 bp)
ACCTCGAGCTTCCATGGTTGATCTT
LOC_Os02g30100
Os.13604.1.S1_at--1039--9931Chr02:17869908..17869932 (25 bp)
TACGAAGATTTAGTCAGCACCATAA
LOC_Os02g30100
Os.13604.1.S1_at--1158--351Chr02:17869969..17869993 (25 bp)
ATAATCGGGCAAGTGCGGTTTCAAA
LOC_Os02g30100
Target Sequence 
GAACACGTTCGCCATTCACAGGGATCCCCAGGTTTGGGATGAACCAGAAGCCTTCATCCCAGATAGGTTTGCGGATGGAA
AAAACGAAGGGAAGATGGTGATCCCGTTTGGTATGGGGAGACGGCGGTGCCCAGGAGAGAATTTGGGGATGCAAATGGTA
GGACTTGCCCTTGGGACATTGATCCAGTGTTTTGATTGGGAAAGGGTTGGGGAAGAGCTGGTTGACATGAGGGAGTGCTC
TGGCCTTACAATGCCAAAGGAGTTGCCTCTCGAGGCCCTCTATCAACCTCGAGCTTCCATGGTTGATCTTCTTACGAAGA
TTTAGTCAGCACCATAAAAAATAATTTGTTGTTCAACTTTTGTAATGTAAGGAATAATCGGGCAAGTGCGGTTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis