Browse Element(s) Details


OsAffx.24506.1.S1_at

Description tigr:9630.m02874
TID=OsAffx.24506.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=3-oxoacyl-(acyl-carrier-protein) reductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3006011/113-oxoacyl-reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29990NANA2+17816988..17817950retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30000OsAffx.31869.1.S1_at9/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.5.S1_x_at6/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.4.S1_x_at2/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.2.S1_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30000OsAffx.31869.3.S1_s_at1/112+17818280..17819395retrotransposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_at2/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010Os.53292.1.S1_x_at1/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30010OsAffx.20733.1.A1_x_at1/112+17823875..17826522transposon protein, putative, unclassified
LOC_Os02g30020NANA2+17830216..17833146retrotransposon protein, putative, unclassified
LOC_Os02g30030OsAffx.22722.1.S1_at1/112+17834067..17835800retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30040OsAffx.1646.1.S1_x_at1/112+17836562..17839492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30050Os.37768.1.S1_at10/112+17840425..1784202060S ribosomal protein L35, putative, expressed
LOC_Os02g30060OsAffx.24506.1.S1_at11/112+17842472..178466783-oxoacyl-reductase, chloroplast precursor, putative, expressed
LOC_Os02g30070OsAffx.24507.1.S1_at11/112+17853780..17854251expressed protein
LOC_Os02g30080OsAffx.24508.1.S1_at11/112+17856325..17861119Cytochrome P450 family protein, expressed
LOC_Os02g30090OsAffx.24508.2.S1_at10/112+17862035..17865321Cytochrome P450 family protein
LOC_Os02g30100Os.13604.1.S1_at11/112+17867793..17870042Cytochrome P450 family protein, expressed
LOC_Os02g30100Os.23296.1.S1_x_at1/112+17867793..17870042Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004316molecular_function3-oxoacyl-[acyl-carrier protein] reductase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24506.1.S1_at--918--5231Chr02:17843625..17843649 (25 bp)
GAATCACACGGGATACATTGTTGCT
LOC_Os02g30060
OsAffx.24506.1.S1_at--1034--1231Chr02:17843570..17843594 (25 bp)
AGTTGATCTTAATCTTACGGGCGTA
LOC_Os02g30060
OsAffx.24506.1.S1_at--56--10471Chr02:17843556..17843580 (25 bp)
TTACGGGCGTATTCCTTTGCACACA
LOC_Os02g30060
OsAffx.24506.1.S1_at--61--4972Chr02:17843288..17843312 (25 bp)
GCATCAGTTGTTGGCCTTACTGGCA
LOC_Os02g30060
OsAffx.24506.1.S1_at--31--631Chr02:17843081..17843105 (25 bp)
ATGCTGTTGCTCCTGGATTTATTTC
LOC_Os02g30060
OsAffx.24506.1.S1_at--760--391Chr02:17843056..17843080 (25 bp)
ATCAGATATGACCTCCCAACTTGGG
LOC_Os02g30060
OsAffx.24506.1.S1_at--585--451Chr02:17843015..17843036 (22 bp)
ATCTGATAACTATTCCCTTAGGGAG
LOC_Os02g30060
OsAffx.24506.1.S1_at--805--7911Chr02:17842789..17842813 (25 bp)
GGTTGAGTTCTTAGCACTTAGCCCT
LOC_Os02g30060
OsAffx.24506.1.S1_at--336--1671Chr02:17842770..17842794 (25 bp)
AGCCCTGGTGGAAGCTACATCACTG
LOC_Os02g30060
OsAffx.24506.1.S1_at--1016--1951Chr02:17842516..17842773 (25 bp)
ACTGGGCAGGTCTCATACTCTCGTG
LOC_Os02g30060
OsAffx.24506.1.S1_at--213--331Chr02:17842502..17842526 (25 bp)
ATACTCTCGTGTCACCATACAGGTC
LOC_Os02g30060
Target Sequence 
GAATCACACGGGATACATTGTTGCTGAGAATGAAGAAATCTCAGTGGCAAGATGTAGTTGATCTTAATCTTACGGGCGTA
TTCCTTTGCACACAGGCTGCGACAAAAGTAATGATGAAGAAGAAAAAGGGAAGAGTTATCAACATAGCATCAGTTGTTGG
CCTTACTGGCAATCTTGGCCAAGTTAATTATGCTGCTGCCAAGGCTGCAGTTATTGGGTTAACAAAAACAACTGCTAGGG
AATTTGCAAGCAGAAATATTACAGTGAATGCTGTTGCTCCTGGATTTATTTCATCAGATATGACCTCCCAACTTGGGGAG
GAGATTGAGAAGAAAAATCTGATAACTATTCCCTTAGGGAGATATGGTGAACCAGAGGAAGTTGCTGATCTGGTTGAGTT
CTTAGCACTTAGCCCTGGTGGAAGCTACATCACTGGGCAGGTCTCATACTCTCGTGTCACCATACAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis