Browse Element(s) Details


Os.16015.1.S1_a_at

Description gb:AK101319.1
DB_XREF= gi:32986528
TID=Os.16015.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16015 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034D15, full insert sequence.
FL= gb:AK101319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0419011/11Auxin-independent growth promoter protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04160OsAffx.14535.1.S1_at11/115+1842606..1844519pentatricopeptide, putative
LOC_Os05g04170Os.5660.1.S1_at11/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04170Os.22710.2.S1_x_at1/115+1844908..1851340AMP-binding enzyme family protein, expressed
LOC_Os05g04180OsAffx.26725.1.S1_x_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180Os.16028.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04180OsAffx.26725.1.S1_at11/115+1863062..1867241Agenet domain containing protein
LOC_Os05g04190Os.16015.1.S1_a_at11/115+1867875..1873855Auxin-independent growth promoter protein, putative, expressed
LOC_Os05g04200OsAffx.26726.1.S1_at7/115+1877124..1879153hypothetical protein
LOC_Os05g04210OsAffx.14536.1.S1_at11/115+1885939..1887306Cpm7, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16015.1.S1_a_at--314--8391Chr05:1868427..1868451 (25 bp)
GGCGACTTGCCTGAAGATGATTCTA
LOC_Os05g04190
Os.16015.1.S1_a_at--213--6571Chr05:1868409..1868433 (25 bp)
GATTCTAGCCAAGACACACAGCAGG
LOC_Os05g04190
Os.16015.1.S1_a_at--83--6251Chr05:1868338..1868362 (25 bp)
GATGGATCCAGATGATTGAACACAT
LOC_Os05g04190
Os.16015.1.S1_a_at--479--5491Chr05:1868321..1868345 (25 bp)
GAACACATGCGGAGCTTGGTACTAT
LOC_Os05g04190
Os.16015.1.S1_a_at--461--7831Chr05:1868304..1868328 (25 bp)
GGTACTATGGCGCACCTTTTATCCG
LOC_Os05g04190
Os.16015.1.S1_a_at--624--10351Chr05:1868288..1868312 (25 bp)
TTTTATCCGCTATATCAGCTCCAGG
LOC_Os05g04190
Os.16015.1.S1_a_at--206--9671Chr05:1868274..1868298 (25 bp)
TCAGCTCCAGGTAACCTTGAGTGAT
LOC_Os05g04190
Os.16015.1.S1_a_at--710--8891Chr05:1868257..1868281 (25 bp)
TGAGTGATATCAGCACACATTGCAA
LOC_Os05g04190
Os.16015.1.S1_a_at--543--3051Chr05:1868211..1868235 (25 bp)
AATCGGATCAGTTTGCAGCAACACA
LOC_Os05g04190
Os.16015.1.S1_a_at--108--271Chr05:1868158..1868182 (25 bp)
ATATGATATGTACACCTCGGATGCT
LOC_Os05g04190
Os.16015.1.S1_a_at--12--3791Chr05:1868143..1868167 (25 bp)
CTCGGATGCTTTGCTTGGACTACTA
LOC_Os05g04190
Target Sequence 
GGCGACTTGCCTGAAGATGATTCTAGCCAAGACACACAGCAGGAATNTGATAGANGTGACATGAATAAATCCTCAGANCA
GGATGAGGAGATGGATCCAGATGATTGAACACATGCGGAGCTTGGTACTATGGCGCACCTTTTATCCGCTATATCAGCTC
CAGGTAACCTTGAGTGATATCAGCACACATTGCAATTTGCAGGGATNTACTGGACAAATCGGATCAGTTTGCAGCAACAC
ATCNTGAGCTAGGAGAGCCCAAGAATGATATATGATATGTACACCTCGGATGCTTTGCTTGGACTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16015.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis