Browse Element(s) Details


Os.16162.1.S1_at

Description gb:AK070561.1
DB_XREF= gi:32980585
TID=Os.16162.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061G06, full insert sequence.
FL= gb:AK070561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3333010/11myosin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33320Os.8712.1.S2_at11/118+20643254..20649547expressed protein
LOC_Os08g33320Os.8712.1.S1_at11/118+20643254..20649547expressed protein
LOC_Os08g33330Os.16162.1.S1_at10/118+20657585..20661844myosin-like protein, putative, expressed
LOC_Os08g33340Os.9414.1.S1_at11/118+20664175..20668866UV excision repair protein Rad23 containing protein, expressed
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16162.1.S1_at--732--8431Chr08:20661313..20661337 (25 bp)
GGCCATGGAGCTTATGGACCACCAA
LOC_Os08g33330
Os.16162.1.S1_at--189--10111Chr08:20661325..20661349 (25 bp)
TATGGACCACCAATGGCGACTCCAG
LOC_Os08g33330
Os.16162.1.S1_at--442--8431Chr08:20661355..20661379 (25 bp)
GGCCTGCAAGGCGTCTATGATGATG
LOC_Os08g33330
Os.16162.1.S1_at--283--5111Chr08:20661407..20661431 (25 bp)
GCACTGGATCTTGGGCACCACATGA
LOC_Os08g33330
Os.16162.1.S1_at--156--711Chr08:20661428..20661452 (25 bp)
ATGATCCCCATGGTTATCCACAACT
LOC_Os08g33330
Os.16162.1.S1_at--417--8271Chr08:20661482..20661506 (25 bp)
GGCAGTGCTTTATCTTCGTAATATC
LOC_Os08g33330
Os.16162.1.S1_at--913--6391Chr08:20661524..20661548 (25 bp)
GATCGTGACAAAGCTTTTCTCTTAG
LOC_Os08g33330
Os.16162.1.S1_at--440--8671Chr08:20661556..20661580 (25 bp)
TGTGGTGCACAGTAGATGGTCTTTT
LOC_Os08g33330
Os.16162.1.S1_at--299--10111Chr08:20661632..20661656 (25 bp)
TATGGTTGCCTTGGTACCTCTCCAA
LOC_Os08g33330
Os.16162.1.S1_at--1081--6271NONE
GATGTTGCGCAGAAGTTTGTCCCTA
NONE
Os.16162.1.S1_at--67--6871Chr08:20661794..20661818 (25 bp)
GTTTGTCCCTACCAAATTGCAATAG
LOC_Os08g33330
Target Sequence 
GGCCATGGAGCTTATGGACCACCAATGGCGACTCCAGGGATGGGCCTGCAAGGCGTCTATGATGATGGCTATCCTTCCAT
AGNCAGCCGCTATGGCACTGGATCTTGGGCACCACATGATCCCCATGGTTATCCACAACTGTGACTGGGCTTCTGATCNT
TCTTCCCTGGGCAGTGCTTTATCTTCGTAATATCGCTTGATGGTTGATACTGATCGTGACAAAGCTTTTCTCTTAGTAGA
ACTTGTGGTGCACAGTAGATGGTCTTTTGNGGGGTGCACTTCAAGTGTTGTTAGTTTAGCATATGTAGCAATATACCNGC
TATGGTTGCCTTGGTACCTCTCCAAAAAATGTAATCAATGATGACTGTAAGAGGGAATTCAGTGCAACGAAGAAGNAAAA
TAGGAACTTAAGCTTTACNAGATGCAAGTTTGCGTATGAATATAACAAGGTGGAATCAGTCAGGGCCTGGATGTTGCGCA
GAAGTTTGTCCCTACCAAATTGCAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis