Browse Element(s) Details


Os.9414.1.S1_at

Description gb:AK063768.1
DB_XREF= gi:32973786
TID=Os.9414.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B09, full insert sequence.
FL= gb:AK064881.1 gb:AK063768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3334011/11UV excision repair protein Rad23 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33320Os.8712.1.S2_at11/118+20643254..20649547expressed protein
LOC_Os08g33320Os.8712.1.S1_at11/118+20643254..20649547expressed protein
LOC_Os08g33330Os.16162.1.S1_at10/118+20657585..20661844myosin-like protein, putative, expressed
LOC_Os08g33340Os.9414.1.S1_at11/118+20664175..20668866UV excision repair protein Rad23 containing protein, expressed
LOC_Os08g33350Os.8489.1.A1_at11/118+20669715..20672354RNA recognition motif family protein, expressed
LOC_Os08g33360Os.50043.1.A1_at1/118+20675844..20678311transposon protein, putative, Mariner sub-class
LOC_Os08g33370Os.6323.2.S1_a_at11/118+20679661..2068278814-3-3, putative, expressed
LOC_Os08g33380Os.23161.2.S1_x_at11/118+20684392..20687602expressed protein
LOC_Os08g33380Os.23161.1.S1_at10/118+20684392..20687602expressed protein
LOC_Os08g33390Os.6305.1.S1_at10/118+20688096..20692046Regulator of chromosome condensation family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006284biological_processbase-excision repair
GO:0006289biological_processnucleotide-excision repair
GO:0006512biological_processubiquitin cycle
GO:0003684molecular_functiondamaged DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9414.1.S1_at--1091--8891Chr08:20668091..20668115 (25 bp)
TGAGTTCCTGCGCTTAATCAACGAA
LOC_Os08g33340
Os.9414.1.S1_at--469--1371Chr08:20668234..20668258 (25 bp)
AGACCAGTTTGCTGCGGGAATGCCT
LOC_Os08g33340
Os.9414.1.S1_at--214--2411Chr08:20668260..20668284 (25 bp)
AAACAGTGGCTGTCACACCTGAGGA
LOC_Os08g33340
Os.9414.1.S1_at--267--6391Chr08:20668452..20668476 (25 bp)
GATCGCGATCTGGTCCTGGAGGTAT
LOC_Os08g33340
Os.9414.1.S1_at--538--3911Chr08:20668467..20668491 (25 bp)
CTGGAGGTATTCTTCGCGTGCAACA
LOC_Os08g33340
Os.9414.1.S1_at--743--6611Chr08:20668502..20668526 (25 bp)
GTTGGCCGCAAACTATCTCTTGGAC
LOC_Os08g33340
Os.9414.1.S1_at--575--6311Chr08:20668572..20668596 (25 bp)
GATGACTGACCCGTTTTTAATGATA
LOC_Os08g33340
Os.9414.1.S1_at--507--1811Chr08:20668681..20668705 (25 bp)
ACCCATCCATCCAGGCGTGAGAAAA
LOC_Os08g33340
Os.9414.1.S1_at--1029--6811Chr08:20668708..20668732 (25 bp)
GTTTTTGAGCTTCTCTCATCATCAT
LOC_Os08g33340
Os.9414.1.S1_at--1011--3551Chr08:20668724..20668748 (25 bp)
CATCATCATTCTTTTTTCTGCTTTG
LOC_Os08g33340
Os.9414.1.S1_at--298--6831Chr08:20668810..20668834 (25 bp)
GTTTCAAGTCTTCAGTGTCGGTTAA
LOC_Os08g33340
Target Sequence 
TGAGTTCCTGCGCTTAATCAACGAACCTGCAGAGGGAGCTGAAGGGAACTTGCTAGACCAGTTTGCTGCGGGAATGCCTC
AAACAGTGGCTGTCACACCTGAGGAGAACGAAGCCATACAACGTCTGGAACAAATGGGGTTTGATCGCGATCTGGTCCTG
GAGGTATTCTTCGCGTGCAACAAGGATGAGCNGTTGGCCGCAAACTATCTCTTGGACCACATGAACGAGTTCGACGACGA
CGCCCCTGAACCACCGCAATAAGATGACTGACCCGTTTTTAATGATACATGCCAGTCACACAAGAGACATTGGGTTGCAA
ACAGTGGTCACCAAGACTGGTGATTATCCCCGTTTTAGAACATCCAAATCCACCCATCCATCCAGGCGTGAGAAAAATGT
TTTTGAGCTTCTCTCATCATCATTCTTTTTTCTGCTTTGGGATTTTTATGATGATTAGTACATACTCTAGATGACATTTA
CAGACTACATATAACCAAATGTTTCAAGTCTTCAGTGTCGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis