Browse Element(s) Details


Os.16171.1.A1_at

Description gb:AK068973.1
DB_XREF= gi:32978997
TID=Os.16171.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001O14, full insert sequence.
FL= gb:AK068973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3014011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30110Os.23296.1.S1_x_at10/112+17875019..17880557Cytochrome P450 family protein, expressed
LOC_Os02g30120Os.28943.1.S1_x_at1/112+17887328..17890541retrotransposon protein, putative, unclassified
LOC_Os02g30130NANA2+17891166..17897367retrotransposon protein, putative, unclassified
LOC_Os02g30140Os.16171.1.A1_at11/112+17899269..17903289expressed protein
LOC_Os02g30150OsAffx.2801.1.S1_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30150Os.15982.1.S1_s_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30160OsAffx.25952.1.S1_s_at2/112+17912237..17919538retrotransposon protein, putative, unclassified
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16171.1.A1_at--141--451Chr02:17902675..17902699 (25 bp)
ATCTAAGATCCCATTTTACCGACAT
LOC_Os02g30140
Os.16171.1.A1_at--217--2851Chr02:17902783..17902807 (25 bp)
AAGTCTTGTTGTTTTCCAGGCTGTT
LOC_Os02g30140
Os.16171.1.A1_at--1015--10231Chr02:17902873..17902897 (25 bp)
TTTGAGCTACAAGAAGGCGCCCTGA
LOC_Os02g30140
Os.16171.1.A1_at--641--3231Chr02:17902936..17902960 (25 bp)
CAAGAGCTTCTTGCCGATGTTACCG
LOC_Os02g30140
Os.16171.1.A1_at--998--6271Chr02:17902951..17902975 (25 bp)
GATGTTACCGTCTGACTACCTTCTA
LOC_Os02g30140
Os.16171.1.A1_at--1157--9951Chr02:17902974..17902998 (25 bp)
TACCCTGGAGCTAACGGGCGTTGAT
LOC_Os02g30140
Os.16171.1.A1_at--1006--3351Chr02:17903006..17903030 (25 bp)
CACCCCATCATGTACAGTTTCAGTT
LOC_Os02g30140
Os.16171.1.A1_at--959--1211Chr02:17903027..17903051 (25 bp)
AGTTAGCCTGTCTCTACTGTAGTGT
LOC_Os02g30140
Os.16171.1.A1_at--473--10071Chr02:17903120..17903144 (25 bp)
TAGGTTTTCCACTTACTTCCTTGCT
LOC_Os02g30140
Os.16171.1.A1_at--103--10731Chr02:17903140..17903164 (25 bp)
TTGCTCCTTGGCGTCATAGGTTGAT
LOC_Os02g30140
Os.16171.1.A1_at--967--6631Chr02:17903159..17903183 (25 bp)
GTTGATCGAACCACCTACATGAGAC
LOC_Os02g30140
Target Sequence 
ATCTAAGATCCCATTTTACCGACATGGGGTCAACCAGAATTGGAATATGTGGCTAATAATTTCTGGTCAACTGTGCAGCA
AACGGCATTATGAGTTAATGACCTTTGTAAGTCTTGTTGTTTTCCAGGCTGTTGATCAGGAGGCGAATTCTCTGCAGGAG
ATGCTGGAGTCTGTGGTAGGAATGATCTGGGAGAGCGGTTTGAGCTACAAGAAGGCGCCCTGAGCACAGTTATGCCGAGT
GGCGACAAGTAGACAATGCTACAAGAGCTTCTTGCCGATGTTACCGTCTGACTACCTTCTACCCTGGAGCTAACGGGCGT
TGATCTCAGCCCACCCCATCATGTACAGTTTCAGTTAGCCTGTCTCTACTGTAGTGTCAGTGTGTCATTCTGGTTAGCAG
GTTAAGTAGTAGTGAGTAGTCTATGGGCATGGTCGCATGGTATGGTAGGTTTTCCACTTACTTCCTTGCTCCTTGGCGTC
ATAGGTTGATCGAACCACCTACATGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16171.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis