Browse Element(s) Details


Os.16225.1.S1_at

Description gb:AK068360.1
DB_XREF= gi:32978378
TID=Os.16225.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146O19, full insert sequence.
FL= gb:AK068360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1882011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18790OsAffx.2674.1.S1_at11/112+10955205..10955979hypothetical protein
LOC_Os02g18800OsAffx.29369.1.S1_at11/112+10959461..10960432hypothetical protein
LOC_Os02g18810Os.54169.1.S1_at11/112+10960659..10968044pentatricopeptide, putative, expressed
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16225.1.S1_at--252--2591Chr02:10977799..10977823 (25 bp)
AACGTTGCATGCTTTCATCCTTCCC
LOC_Os02g18820
Os.16225.1.S1_at--987--4191Chr02:10977777..10977801 (25 bp)
CCCCTGGAGGTGGTCTTGTTTATGG
LOC_Os02g18820
Os.16225.1.S1_at--1009--991Chr02:10977653..10977677 (25 bp)
AGGATCTTGCAGCACAATGGTGCAG
LOC_Os02g18820
Os.16225.1.S1_at--1077--5031Chr02:10977632..10977656 (25 bp)
GCAGATATCACAAGCACAGGGTTGA
LOC_Os02g18820
Os.16225.1.S1_at--804--4751Chr02:10975020..10975044 (25 bp)
GCTGAACGATTGGTTGCCATGTGTT
LOC_Os02g18820
Os.16225.1.S1_at--174--7431Chr02:10975003..10975024 (22 bp)
GTGTTATGTGTACTTCTCCAGGAAT
LOC_Os02g18820
Os.16225.1.S1_at--612--2051Chr02:10974768..10975013 (25 bp)
ACTTCTCCAGGAATTTTCCTCTGCA
LOC_Os02g18820
Os.16225.1.S1_at--168--431Chr02:10974737..10974761 (25 bp)
ATCATTGTACAAGTGAGCCTCAAGG
LOC_Os02g18820
Os.16225.1.S1_at--739--5131Chr02:10974696..10974720 (25 bp)
GCAAAGTCATGGCAGATTCTCAAAT
LOC_Os02g18820
Os.16225.1.S1_at--810--2271Chr02:10974675..10974699 (25 bp)
AAATGAGTTTGCTAGAGTGCCTTGG
LOC_Os02g18820
Os.16225.1.S1_at--932--6671Chr02:10972982..10973006 (25 bp)
GTTGCTGCTGTCAAGTCATCACGAT
LOC_Os02g18820
Target Sequence 
AACGTTGCATGCTTTCATCCTTCCCCTGGAGGTGGTCTTGTTTATGGGACCAAGGAAGGAANGCTCAGGATCTTGCAGCA
CAATGGTGCAGATATCACAAGCACAGGGTTGAATTGCTTTATCGAGGAAAATATGCTTGAGATTCAGAGATATGCGCTGG
AAGGCTGAACGATTGGTTGCCATGTGTTATGTGTACTTCTCCAGGAATTTTCCTCTGCAAAGTTTATCATTGTACAAGTG
AGCCTCAAGGAAATCATCAGATTTCAGCAAAGTCATGGCAGATTCTCAAATGAGTTTGCTAGAGTGCCTTGGGGATAGGT
CTGTGCAGAGGGAGTTGGAAGATGTAAATCAACACAANCATGTTGCTGCTGTCAAGTCATCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis