Browse Element(s) Details


Os.16261.1.S1_at

Description gb:AK068107.1
DB_XREF= gi:32978125
TID=Os.16261.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130C21, full insert sequence.
FL= gb:AK068107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3091011/11CAAX amino terminal protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30894Os.11737.1.A1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30894OsAffx.27894.1.S1_at11/116+17937102..17969693HEAT repeat family protein, expressed
LOC_Os06g30910Os.16261.1.S1_at11/116+17972898..17977690CAAX amino terminal protease family protein, expressed
LOC_Os06g30920Os.50508.1.S1_at4/116+17983456..17983849hypothetical protein
LOC_Os06g30930Os.6225.2.S1_at11/116+17992240..17994417expressed protein
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16261.1.S1_at--449--9431Chr06:17977119..17977143 (25 bp)
TCGGGCACCTGAGACAAGTTCTACT
LOC_Os06g30910
Os.16261.1.S1_at--870--3691Chr06:17977148..17977172 (25 bp)
CTATGTTTTGCGTCTTTCGTGGAGA
LOC_Os06g30910
Os.16261.1.S1_at--843--8991Chr06:17977176..17977200 (25 bp)
TGAAGACCAGTCTATTCAGGACACA
LOC_Os06g30910
Os.16261.1.S1_at--232--10451Chr06:17977298..17977322 (25 bp)
TTAGGGTGTTATTCCTTGGCCTGAG
LOC_Os06g30910
Os.16261.1.S1_at--881--891Chr06:17977321..17977345 (25 bp)
AGGCCCAGAAGCGTCTTTGTTGCTT
LOC_Os06g30910
Os.16261.1.S1_at--978--3991Chr06:17977384..17977408 (25 bp)
CGTGTATAGATTTCCCATTTCGTAT
LOC_Os06g30910
Os.16261.1.S1_at--402--3151Chr06:17977452..17977476 (25 bp)
AATTCATTTAGCAAGACGGCCACTA
LOC_Os06g30910
Os.16261.1.S1_at--470--8431Chr06:17977469..17977493 (25 bp)
GGCCACTATGCATTCGACCGATTCT
LOC_Os06g30910
Os.16261.1.S1_at--992--5791Chr06:17977484..17977508 (25 bp)
GACCGATTCTTTTGCCCATTAGATT
LOC_Os06g30910
Os.16261.1.S1_at--121--7431Chr06:17977609..17977633 (25 bp)
GTGTTCTGCATATCTCGTGTGAGTT
LOC_Os06g30910
Os.16261.1.S1_at--850--3031Chr06:17977639..17977663 (25 bp)
AATCCAGGAGAATGCCTCGATCGAT
LOC_Os06g30910
Target Sequence 
TCGGGCACCTGAGACAAGTTCTACTAAGACTATGTTTTGCGTCTTTCGTGGAGATGATGAAGACCAGTCTATTCAGGACA
CANNGGGGACACAAGGTGGTAGTCAGATTTTTGTGGAGAAATTGTGTAGAGTAAAGAGAAAAGAGCAGTTTGTTGGCGCG
CTAGTGCAGGAGGAATAGTCTTTAGGGTGTTATTCCTTGGCCTGAGGCCCAGAAGCGTCTTTGTTGCTTTCGTGTAAATT
ACATACGCATGAGAATAATTGTCTCATCGTGTATAGATTTCCCATTTCGTATTAAATTGTGTATTCGTTTCCCCNTAGTG
TGGGCTCTGGAAAATAAATTCATTTAGCAAGACGGCCACTATGCATTCGACCGATTCTTTTGCCCATTAGATTAATAAGC
TGTAGTGATTCTAAATTCAGAGAAAACTATCAGTATTATGTGTTGAGATGCTTTGAGCGATGTTATGTATCTAAACGTGA
ATGAGCATTGGTGGTGTTCTGCATATCTCGTGTGAGTTGTAAAAATCCAGGAGAATGCCTCGATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis