Browse Element(s) Details


Os.16267.1.S1_at

Description gb:AK100643.1
DB_XREF= gi:32985852
TID=Os.16267.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110J21, full insert sequence.
FL= gb:AK100643.1 gb:AK102669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3752011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37490Os.51408.1.S1_at11/119+21604182..21606542Auxin responsive protein
LOC_Os09g37500Os.50785.1.S1_at11/119+21608790..21609471auxin induced protein, putative, expressed
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16267.1.S1_at--811--8951Chr09:21635682..21635706 (25 bp)
TGACAAGATTCACTCAATGTTGGGA
LOC_Os09g37520
Os.16267.1.S1_at--790--3511Chr09:21635802..21635826 (25 bp)
CATGAAGTTGTATCCATCCATATGA
LOC_Os09g37520
Os.16267.1.S1_at--876--6431Chr09:21635840..21635864 (25 bp)
GATCATGCTGCCAGGTTCAGGGAAA
LOC_Os09g37520
Os.16267.1.S1_at--194--10011Chr09:21635891..21635915 (25 bp)
TAGCATGCCAGTGTACATAGTTGAA
LOC_Os09g37520
Os.16267.1.S1_at--628--2931Chr09:21635914..21635938 (25 bp)
AAGGCAATGCGATATGGGATGAACC
LOC_Os09g37520
Os.16267.1.S1_at--570--5071Chr09:21635983..21636007 (25 bp)
GCAGCCTAGCTAGTTCACCTGTTAG
LOC_Os09g37520
Os.16267.1.S1_at--552--2311Chr09:21636048..21636072 (25 bp)
AAAGTGGATGCCCTGACCCCGTTCT
LOC_Os09g37520
Os.16267.1.S1_at--472--4231Chr09:21636066..21636090 (25 bp)
CCGTTCTGCAGTTCACTAACTGTTG
LOC_Os09g37520
Os.16267.1.S1_at--1143--111Chr09:21636124..21636148 (25 bp)
ATTCATTTGTATCCCTGTACAGCCG
LOC_Os09g37520
Os.16267.1.S1_at--260--4191Chr09:21636169..21636193 (25 bp)
CCCTTTTTTGTGTCATGTTTATTCT
LOC_Os09g37520
Os.16267.1.S1_at--1040--5691Chr09:21636208..21636232 (25 bp)
GACTTTGCCTGTTTCTGCTTCTCTC
LOC_Os09g37520
Target Sequence 
TGACAAGATTCACTCAATGTTGGGAAATCCCAGTAAATAGTTGGAAGATGTAAGCTGCATNAAACGAAATGCATGGNTCT
NAAGCATGNNGCAGTAAAATGTTCCNATCATGAGNNCNAGATTCATGAAGTTGTATCCATCCATATGAAATAGTCAAATG
TGATCATGCTGCCAGGTTCAGGGAAAGAGTCACTGGAAGAGTGCAACAATGNTAGCATGCCAGTGTACATAGTTGAAGGC
AATGCGATATGGGATGAACCAAAGCTGATGCTGTGGGANATGNTTCCCTCCCAGNTGGGAGGCTGCAGCCTAGCTAGTTC
ACCTGTTAGGGGAGTGATGGATGATGATGAGCTTGTAGGATAGAGAAAAAAAGTGGATGCCCTGACCCCGTTCTGCAGTT
CACTAACTGTTGGATTTTTTTGTTCCGTTATTTATTATACATATAATTCATTTGTATCCCTGTACAGCCGGTGGNTAANT
CATAAACCCCCCCTTTTTTGTGTCATGTTTATTCTATTTCTCCCCCATCGACTTTGCCTGTTTCTGCTTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis