Browse Element(s) Details


Os.16295.1.S1_at

Description gb:NM_194074.1
DB_XREF= gi:36104213
GEN=OSJNBa0015G17.9
TID=Os.16295.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16295 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0015G17.9), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4044010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40380OsAffx.3598.1.S1_x_at2/113+22395769..22396161expressed protein
LOC_Os03g40390Os.54052.1.S1_at11/113+22397941..22399643expressed protein
LOC_Os03g40400OsAffx.13263.1.S1_at11/113+22400439..22402342Protein kinase domain containing protein
LOC_Os03g40410Os.12987.1.S1_at11/113+22406162..22408570expressed protein
LOC_Os03g40430OsAffx.13264.1.S1_x_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40430OsAffx.13264.1.S1_at11/113+22416916..22417542hypothetical protein
LOC_Os03g40440Os.16295.1.S1_at10/113+22418386..22419453expressed protein
LOC_Os03g40450Os.16091.1.S1_at5/113+22423845..22424454expressed protein
LOC_Os03g40460NANA3+22429152..22432739hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16295.1.S1_at--833--10811Chr03:22419215..22419239 (25 bp)
TTGGGTTAGGCCTGAGGTCAGTATA
LOC_Os03g40440
Os.16295.1.S1_at--59--7831Chr03:22419230..22419254 (25 bp)
GGTCAGTATACAGTCTCCTCTTAAT
LOC_Os03g40440
Os.16295.1.S1_at--762--7151Chr03:22419242..22419266 (25 bp)
GTCTCCTCTTAATATATTATTCTGC
LOC_Os03g40440
Os.16295.1.S1_at--751--10211Chr03:22419259..22419283 (25 bp)
TATTCTGCACGATTATTTTGTTGAG
LOC_Os03g40440
Os.16295.1.S1_at--260--6031Chr03:22419300..22419324 (25 bp)
GAGAGGATTCATCATTTTCCCCAAA
LOC_Os03g40440
Os.16295.1.S1_at--974--10851Chr03:22419326..22419350 (25 bp)
TTGGTTATCCACTTGGCTTTTGTCC
LOC_Os03g40440
Os.16295.1.S1_at--562--8271Chr03:22419339..22419363 (25 bp)
TGGCTTTTGTCCCAACTTGGATAAT
LOC_Os03g40440
Os.16295.1.S1_at--333--6451Chr03:22419358..22419382 (25 bp)
GATAATTTTGGTAGATCTAATCCAC
LOC_Os03g40440
Os.16295.1.S1_at--845--4051Chr03:22419390..22419414 (25 bp)
CGATGAACTACTTAACTTAGGGTCT
LOC_Os03g40440
Os.16295.1.S1_at--995--10231Chr03:22419416..22419440 (25 bp)
TTTGGTACAGCTCCCACTCTGAGAC
LOC_Os03g40440
Os.16295.1.S1_at--366--5991Chr03:22419436..22419460 (25 bp)
GAGACTCTAATCTCTTGAAGCTAGA
NONE
Target Sequence 
TTGGGTTAGGCCTGAGGTCAGTATACAGTCTCCTCTTAATATATTATTCTGCACGATTATTTTGTTGAGATATTGTACTA
GTCAAGAGAGGATTCATCATTTTCCCCAAANTTGGTTATCCACTTGGCTTTTGTCCCAACTTGGATAATTTTGGTAGATC
TAATCCACANTAGATCGATGAACTACTTAACTTAGGGTCTNTTTGGTACAGCTCCCACTCTGAGACTCTAATCTCTTGAA
GCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis