Browse Element(s) Details


Os.16498.1.S1_at

Description gb:AK066437.1
DB_XREF= gi:32976455
TID=Os.16498.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067M23, full insert sequence.
FL= gb:AK066437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g168708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16498.1.S1_at--36--4451Chr03:9353028..9353052 (25 bp)
GCCATTCTCTGCGAGGATTATTGAT
LOC_Os03g16870
Os.16498.1.S1_at--606--11Chr03:9353000..9353024 (25 bp)
ATCAACCGGAGTGACCCAAGACGGA
LOC_Os03g16870
Os.16498.1.S1_at--782--5811Chr03:9352988..9353012 (25 bp)
GACCCAAGACGGAGAGCACTTATCT
LOC_Os03g16870
Os.16498.1.S1_at--1019--3831Chr03:9352959..9352983 (25 bp)
CTGCTTCGAGTATTTTAATGTCACT
LOC_Os03g16870
Os.16498.1.S1_at--475--9771Chr03:9352770..9352968 (25 bp)
TAATGTCACTGCAACGGACGCACTC
LOC_Os03g16870
Os.16498.1.S1_at--416--1851Chr03:9352753..9352777 (25 bp)
ACGCACTCTTGCTCTCTATTGATCA
LOC_Os03g16870
Os.16498.1.S1_at--691--8571Chr03:9352725..9352749 (25 bp)
TGGATTTGATGTGCTCGCCAAGGTC
LOC_Os03g16870
Os.16498.1.S1_at--792--7791Chr03:9352704..9352728 (25 bp)
GGTCCCTGAAAAAGCAGTGCTCCTT
LOC_Os03g16870
Os.16498.1.S1_at--844--8811NONE
TGATTGGAGGTCAGCCCGTTCACAA
NONE
Os.16498.1.S1_at--454--1671NONE
AGCCCGTTCACAAGATTTTCCCTTG
NONE
Os.16498.1.S1_at--535--9691NONE
TCACAGGTTGATCCCGTCCAATTAA
NONE
Target Sequence 
GCCATTCTCTGCGAGGATTATTGATGGCATCAACCGGAGTGACCCAAGACGGAGAGCACTTATCTTTTTCTGCTTCGAGT
ATTTTAATGTCACTGCAACGGACGCACTCTTGCTCTCTATTGATCACCATGGATTTGATGTGCTCGCCAAGGTCCCTGAA
AAAGCAGTGCTCCTTGATGTCCCACGACAGTACGTCTGGAGAGAGTTCAGGTTTTCATTCAAAGAAGCTGCCAAGGATAT
TGAGGACTTNTNCCGCATGTTGGTTGAGTTANAANAANAAGCTNTCCAGAGTATGAAGAGCTATAGCGGGTTATAGGTNT
AAAGGGGGGAAGTTAACTTGTTTTTACTACGTTATGTAACCCGAGAATTTATGATGTCTCTCCCTTATCTTTTCTGATTG
GAGGTACATGCAGATCGTTCAATAGATTTTATCTTANGTCTCNGCATCATCTTTACTGATTGGAGGTCAGCCCGTTCACA
AGATTTTCCCTTGTTTTTTGTTGTGCACGGGTCACAGGTTGATCCCGTCCAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis