Browse Element(s) Details


Os.16882.3.S1_x_at

Description gb:AK070751.1
DB_XREF= gi:32980774
TID=Os.16882.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064N17, full insert sequence.
FL= gb:AK070751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1961011/11peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19590Os.53657.1.S1_at11/118+11696261..11704693START domain containing protein, expressed
LOC_Os08g19600NANA8+11710780..11711028hypothetical protein
LOC_Os08g19610Os.16882.1.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.2.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.3.S1_x_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19620OsAffx.17073.1.S1_at11/118+11730182..11731317hypothetical protein
LOC_Os08g19630OsAffx.17074.1.S1_at11/118+11741186..11741428hypothetical protein
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16882.3.S1_x_at--456--8211Chr08:11723399..11723423 (25 bp)
GGAATGCTGAGACTATTGACCCTAA
LOC_Os08g19610
Os.16882.3.S1_x_at--782--5211Chr08:11723527..11723551 (25 bp)
GAATTCTTGGTTACCACTGGACCAG
LOC_Os08g19610
Os.16882.3.S1_x_at--139--4951Chr08:11726340..11726364 (25 bp)
GCATTGCAACTATTCCTACCTATAA
LOC_Os08g19610
Os.16882.3.S1_x_at--872--5571Chr08:11726372..11726396 (25 bp)
GAAAGGATCCGCTTCTTCAATGATT
LOC_Os08g19610
Os.16882.3.S1_x_at--157--3291Chr08:11726426..11726450 (25 bp)
CAAACTGCTCGAGCGTTGTGGGATC
LOC_Os08g19610
Os.16882.3.S1_x_at--920--8611Chr08:11726444..11726468 (25 bp)
TGGGATCGCCCGCTAAAAACTGTTT
LOC_Os08g19610
Os.16882.3.S1_x_at--606--8671Chr08:11726553..11726577 (25 bp)
TGTGTACCTACACTTATTCTTCTCC
LOC_Os08g19610
Os.16882.3.S1_x_at--674--9491Chr08:11726573..11726597 (25 bp)
TCTCCCTCCAATGTCAACTGTATAT
LOC_Os08g19610
Os.16882.3.S1_x_at--40--2571Chr08:11726613..11726637 (25 bp)
AACTGACATCTGCTGTGTTTCTGGC
LOC_Os08g19610
Os.16882.3.S1_x_at--1120--6831Chr08:11726629..11726653 (25 bp)
GTTTCTGGCCCAAAATGTGTACGAC
LOC_Os08g19610
Os.16882.3.S1_x_at--519--5751Chr08:11726651..11726675 (25 bp)
GACGGGTCTCTGATTCATCGAAGTA
LOC_Os08g19610
Target Sequence 
GGAATGCTGAGACTATTGACCCTAAAGCATTTGAACTAAAGCATGCAAGGCCTGGCACCCTCTCATTGTGCCTTGGACAG
AACGATGACGATGATGACATCAAGCTCAATCCTAATTATCACAATGTTGAATTCTTGGTTACCACTGGACCAGGGCCCTG
CCCAGAGCTTGATGGACAGAACATTGTCTTTGGAACTGTATTGGAAGGAATGAATGTTATAACCAGCATTGCAACTATTC
CTACCTATAAACCAGCTGAAAGGATCCGCTTCTTCAATGATTTTGCCCAGTTGATTGGTGATGAAAGAGCTCAAACTGCT
CGAGCGTTGTGGGATCGCCCGCTAAAAACTGTTTATATCAGTGATTGCGGAGAGCTAAAAGTGACCAAACCATCACTTTC
CCCTCCAAGTCTGCCATAAAAAACCACAGAGGCAATTTTGTGTACCTACACTTATTCTTCTCCCTCCAATGTCAACTGTA
TATATGCCATCTAGTATTAACTGACATCTGCTGTGTTTCTGGCCCAAAATGTGTACGACGGGTCTCTGATTCATCGAAGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16882.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis