Browse Element(s) Details


OsAffx.17074.1.S1_at

Description tigr:9636.m01929
TID=OsAffx.17074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1963011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19610Os.16882.1.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.2.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.3.S1_x_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19620OsAffx.17073.1.S1_at11/118+11730182..11731317hypothetical protein
LOC_Os08g19630OsAffx.17074.1.S1_at11/118+11741186..11741428hypothetical protein
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17074.1.S1_at--421--6152Chr08:11741247..11741271 (25 bp)
GAGGTGAACTTGATGATAGGCAGAT
LOC_Os08g19630
OsAffx.17074.1.S1_at--240--271Chr08:11741262..11741286 (25 bp)
ATAGGCAGATGGCTTCTAACTCGAA
LOC_Os08g19630
OsAffx.17074.1.S1_at--34--5051Chr08:11741266..11741290 (25 bp)
GCAGATGGCTTCTAACTCGAATGGT
LOC_Os08g19630
OsAffx.17074.1.S1_at--706--851Chr08:11741270..11741294 (25 bp)
ATGGCTTCTAACTCGAATGGTGATC
LOC_Os08g19630
OsAffx.17074.1.S1_at--756--9811Chr08:11741278..11741302 (25 bp)
TAACTCGAATGGTGATCGTCCTGTG
LOC_Os08g19630
OsAffx.17074.1.S1_at--938--4111Chr08:11741283..11741307 (25 bp)
CGAATGGTGATCGTCCTGTGGGCAA
LOC_Os08g19630
OsAffx.17074.1.S1_at--724--8851Chr08:11741290..11741314 (25 bp)
TGATCGTCCTGTGGGCAAGCTGTTG
LOC_Os08g19630
OsAffx.17074.1.S1_at--660--7411Chr08:11741330..11741354 (25 bp)
GTGTTTGAGGAAATTGTAGGTTGCA
LOC_Os08g19630
OsAffx.17074.1.S1_at--665--6931Chr08:11741345..11741369 (25 bp)
GTAGGTTGCAATTCTGAAATCTCTC
LOC_Os08g19630
OsAffx.17074.1.S1_at--692--7911Chr08:11741348..11741372 (25 bp)
GGTTGCAATTCTGAAATCTCTCAAT
LOC_Os08g19630
OsAffx.17074.1.S1_at--75--9491Chr08:11741357..11741381 (25 bp)
TCTGAAATCTCTCAATTCGAGGATC
LOC_Os08g19630
Target Sequence 
GAGGTGAACTTGATGATAGGCAGATGGCTTCTAACTCGAATGGTGATCGTCCTGTGGGCAAGCTGTTGGAGGAAGAGAGG
AAGGTGTTTGAGGAAATTGTAGGTTGCAATTCTGAAATCTCTCAATTCGAGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis