Browse Element(s) Details


OsAffx.17075.1.S1_at

Description tigr:9636.m01934
TID=OsAffx.17075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1966010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19630OsAffx.17074.1.S1_at11/118+11741186..11741428hypothetical protein
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein
LOC_Os08g19670Os.15295.2.S1_x_at11/118+11767394..11768267expressed protein
LOC_Os08g19670Os.15295.1.S1_at11/118+11767394..11768267expressed protein
LOC_Os08g19680Os.53170.1.S1_at11/118+11774041..11775860expressed protein
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17075.1.S1_at--488--1631Chr08:11766440..11766464 (25 bp)
AGCGGCAGCGTCACTGGCCGAGTTC
LOC_Os08g19660
OsAffx.17075.1.S1_at--30--5831Chr08:11766289..11766313 (25 bp)
GACCGACGGCCTTCGACAGCAGCGG
LOC_Os08g19660
OsAffx.17075.1.S1_at--846--6231NONE
GATGGTGGACAGTGCCTCAAATATT
NONE
OsAffx.17075.1.S1_at--978--7271Chr08:11764220..11764244 (25 bp)
GTGCCTCAAATATTTTATGGACGTA
LOC_Os08g19660
OsAffx.17075.1.S1_at--512--5751Chr08:11764201..11764225 (25 bp)
GACGTATTCAGCTTGGTGGGCAACC
LOC_Os08g19660
OsAffx.17075.1.S1_at--432--7491Chr08:11764186..11764210 (25 bp)
GTGGGCAACCACATCAGTATGAAGA
LOC_Os08g19660
OsAffx.17075.1.S1_at--32--31Chr08:11764150..11764174 (25 bp)
ATTGGCCAGAAGAACCTCATCAGTA
LOC_Os08g19660
OsAffx.17075.1.S1_at--877--5431Chr08:11764139..11764163 (25 bp)
GAACCTCATCAGTATACGCATGGTG
LOC_Os08g19660
OsAffx.17075.1.S1_at--456--2891Chr08:11764114..11764138 (25 bp)
AAGGGTATCATTGTATGCAAGGAAC
LOC_Os08g19660
OsAffx.17075.1.S1_at--327--5191Chr08:11764098..11764122 (25 bp)
GCAAGGAACAATGTCGCATCACTAT
LOC_Os08g19660
OsAffx.17075.1.S1_at--362--7231Chr08:11764086..11764110 (25 bp)
GTCGCATCACTATAACATGGACAAT
LOC_Os08g19660
Target Sequence 
AGCGGCAGCGTCACTGGCCGAGTTCCACGCGTCGCCCGCCGGTGTCTGCGGCCTCGTCGAGTCTGGCGCCACCGCCGTGC
CACCGTCGTGCCACCGCTCTTCCTTTCGCCAGGCTACGGCCGTGCGCGCTCGCCGCCACCTCCACCGCTGCGACCGACGG
CCTTCGACAGCAGCGGCGGCGGCTGTTGGATGGGGATGGTGGACAGTGCCTCAAATATTTTATGGACGTATTCAGCTTGG
TGGGCAACCACATCAGTATGAAGAACTACATCAATATTGGCCAGAAGAACCTCATCAGTATACGCATGGTGAAGGGTATC
ATTGTATGCAAGGAACAATGTCGCATCACTATAACATGGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis