Browse Element(s) Details


Os.15295.1.S1_at

Description gb:AK071000.1
DB_XREF= gi:32981023
TID=Os.15295.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075F10, full insert sequence.
FL= gb:AK071000.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1967011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein
LOC_Os08g19670Os.15295.2.S1_x_at11/118+11767394..11768267expressed protein
LOC_Os08g19670Os.15295.1.S1_at11/118+11767394..11768267expressed protein
LOC_Os08g19680Os.53170.1.S1_at11/118+11774041..11775860expressed protein
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15295.1.S1_at--2--5151Chr08:11767431..11767455 (25 bp)
GCAAAATCTCAAGCCATTGCCTTGT
LOC_Os08g19670
Os.15295.1.S1_at--89--2271Chr08:11767428..11767452 (25 bp)
AAATCTCAAGCCATTGCCTTGTTCT
LOC_Os08g19670
Os.15295.1.S1_at--667--451Chr08:11767426..11767450 (25 bp)
ATCTCAAGCCATTGCCTTGTTCTTT
LOC_Os08g19670
Os.15295.1.S1_at--925--9711Chr08:11767423..11767447 (25 bp)
TCAAGCCATTGCCTTGTTCTTTGAA
LOC_Os08g19670
Os.15295.1.S1_at--850--2651Chr08:11767421..11767445 (25 bp)
AAGCCATTGCCTTGTTCTTTGAAAA
LOC_Os08g19670
Os.15295.1.S1_at--45--1691Chr08:11767420..11767444 (25 bp)
AGCCATTGCCTTGTTCTTTGAAAAT
LOC_Os08g19670
Os.15295.1.S1_at--1014--4431Chr08:11767419..11767443 (25 bp)
GCCATTGCCTTGTTCTTTGAAAATA
LOC_Os08g19670
Os.15295.1.S1_at--1037--3591Chr08:11767417..11767441 (25 bp)
CATTGCCTTGTTCTTTGAAAATACT
LOC_Os08g19670
Os.15295.1.S1_at--190--9171Chr08:11767414..11767438 (25 bp)
TGCCTTGTTCTTTGAAAATACTAAG
LOC_Os08g19670
Os.15295.1.S1_at--29--2271Chr08:11767399..11767423 (25 bp)
AAATACTAAGTTATCCATGTGTTAT
LOC_Os08g19670
Os.15295.1.S1_at--309--331Chr08:11767397..11767421 (25 bp)
ATACTAAGTTATCCATGTGTTATAT
LOC_Os08g19670
Target Sequence 
GCAAAATCTCAAGCCATTGCCTTGTTCTTTGAAAATACTAAGTTATCCATGTGTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis